RnoINT0024211 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70308023-70310588:+
Coord C1 exon
chr7:70308023-70308148
Coord A exon
chr7:70308149-70310033
Coord C2 exon
chr7:70310034-70310588
Length
1885 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACAAATTCTATTTTCTCAGAAT
3' ss Score
6.04
Exon sequences
Seq C1 exon
GACATGAAGAACGCAACCCTCTCCCTGAATTCTAGTGAAAGTGGGCCAAAGTACTACCCTGTGGAGGTTCTGCTGAAAAGTCAGGACCAGGAGCTGCCTGAGGATGTGGACCCCACCAAAAAGGAG
Seq A exon
GTGAGTGGTTGTGCAAGTGAATGAGGGTGCAGCGGAGCTCCCACGGGTTAAGCACCAAGCTCAGGAAATGGCTCAGAGCATATTGGGAATGCTACAGAACTCCAGGGGCATCTGAGCTGCCGAGTCAGCTCGAGGGTTCCTCCCACAGGAACCCATCTGGTGGACTCTGTATCCTTCACCTCGATACTGTTAGCCTAGTCCAGCCACCGTGGAACTGCTGTGAACTAATGTGTTTCCCCTGCCATTCCCCAATTCTTCCCTAGTGTACCTGTAATAGCCAGGGGTCTTCCGAAAGCAGATATGCTCTATTTAAACCACATGGGGGCTAGAGAGATGGCTCAGCAGTTAAGTACATTGGACACTCTTCCAGAAGTCCTGAGTTCAATTCCCAGCAGTCATGTGGTGACTCACAACCATCTACAGTGATGCCCTCTTCTGGTACACAGATGTACATGAGGATAGAGCACCCACATAAAATAAATCTTTAACAAATAATAGTTTAAAAAATTAAATAAAAAATAAAGCATGGGCTGGCAAGATGGGTCAGTGGGTAAAGGCACTTGCAAGTTCGGCACCCAGGACCCACGAGAGGAGAAAATTGATTCCACAAGTTGTCCTCTGATCTCCATGTCTATGTCCCCCTCCCACATGCACACTAAATACATGTAATAGAAAACTTTGAAACACTTCAGATGGCTTCCCACTGTACTTACAAAAAACTCCAAAGGCCTCCACAGTCTGTCCCTGCCCTGGGGGACCTCACATACCCTCTTTCCTTACCACCTTCAGCCAGTACCTGCTTTTCTGTCCCTTGAACAGGCTTGCCCGAGCCATGCAGTCTTTTGCTTGCTGGCGTTCCTATGTGAGAGAGCCAGCTGCCCGCCACATAGAGTTGAGCTCTGGCCAGCTTTCCTTGACTACCAGTTTCCTAACTCTATTTCCCACCACATACACTCCCCTTGGGCCCTTTCATTGCCTGTGTTAGGTTTTAGTTAAATGAATTAACATATTCATGTTGAATGGATAGATATATGAGTGAATTTTCTCCTTGAAAGAGTTTCTTAAAGGACTCTGACTTTTCGGTAACATCTTCTCTAACTAAGTGCTAAGCATCTAGACTACAACATTCTTACAAGCAGAGACCACAGGTTACTTGGGCTTGGTGGCTCATGGCTGTACTCCCAGCACTACAGGGACCAAGGCAGGAAGGTCACCGCAGGTTCCAAGCCAACCTGGGCTATGCAGTGAATTCTATGACAGCCTGGGCTATGGTAAGATGCTGTCTCGGGGAAAAAAATTAATAATAAAAGTCGTAGTTTAGATCTTGACATGGACACTGCATTGGAATGATCTCAATTGCTTATTTTAAGGATTGTGGGGTACTAGAGGTACAGTACACATTGCACATTCTCAGGTTCCTCAGAGAGCAGTCCTGGGTTCAACCCCTAGCACCAAAAGTAAGTATTCAATAAGAAAGGGCATGAAGCAAGATAAATACTTTACTCAAACCTCCATCCATCCAAAATCAAATGTTTATAATTCATCTGTTAACATATAATCCATTCACTGCCTATCAGGCAAGGAACCAGGACTGAGTGGAAAACCCAGACAGTCTTCACCACTGGCTTACATGGCCCTCCATGGCTAAGAAACAATGTAGGTCTGCTACAGCCTTCCTGAGAACCCATTGACACACCTCTCCCAGGGCCGGCCTACCTCACTATGACTATGACTAGTCTTACCGTTCTGGGCTCAGATCCCCTTGCAAGCTAGGCAGGCACACAGCTGTGCAGCTTCTCCGCCAGCCCCAGGCCTCCCTCCTCCCACCTTGCTCACTTGTACTAACGTGCTGTTTTCTTTCTCAACACAAATTCTATTTTCTCAG
Seq C2 exon
AATTACCTCTCGGAACGAGATTTTGTCTCTGTGTTTGGCATCACCAGAGGGCAGTTTGTCTCTCTGCCTGGCTGGAAACAGCTCCAGCTGAAGAAAGAAGCAGGCCTTTTCTAGAACAAGGCGTGACCACAGGAGAGGGCTAATGCAGTGCCAACATCAGCAAAGGTTCATCTACGACTGAGCCCGACACACGCTGCCCTAGATACGACAGATCTCAGGGTCGTGTATTCTGTCTTTTGCATTCATCCTTGCATTTCTAGGTTGCTATACACTAGATGCCAACTATTTGCCTTTTAGCTTTGGTGGTCCTTTAGCGAAAGCCTCAGCAGAGAGAGTGAAGGCATAAAGGTAGAGAGAACTAGAAACTAAGCTCAAAATATTTAATGCATCAGGACCCACATTTGCTTTGAACTATACCCTGCAATCCCCAAAGTGGTGGAGTCAGCACACGCTTCCTGCAGGCCGGACTCCAAATGCCCAGGTCTACCATGTGCCACACCATGTTCATGTGCCACACCATGTTCAGCCTTTCAAATAAAGAGGCCATGTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGAACGCAACCCTCTCC
R:
CACGACCCTGAGATCTGTCGT
Band lengths:
348-2233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]