MmuINT0022340 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126455442-126458050:+
Coord C1 exon
chr10:126455442-126455567
Coord A exon
chr10:126455568-126457505
Coord C2 exon
chr10:126457506-126458050
Length
1938 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACAAACTCTGTTTTCTCAGAAC
3' ss Score
6.5
Exon sequences
Seq C1 exon
GACATGAAGAACGCAACACTTTACCTGAATCCTAGTGACGGTGAGCCAAAGTACTACCCGGTGGAAGTTCTGCTGAAAGGTCAGAACCAGGAGCTGCCTGAGGATGTGGACCCCGCCAAAAAGGAG
Seq A exon
GTGAGTGGTTGTGCGTGCGTGGGAGGGGAGGGGAGGGCGCATGTGCGGAGCTCGAATAGCCTAAGCTCGGAGCTTGGGAAAAGGCTTGGAGCAGATCCAACATGCTGCAGGAACTGCGGGAACTGAACGTAGGGGGCGGAGCTCCCACAGGTTTATAGCACCAAGCTGGAGGGCGGGGCGGTTGGGGGGGGGGGCTCGAACAGCTCAGCGCAGAGGTCCTGAGTTCAATTCCTATCAACCACATGGTGACTCACATCTATAGTGAGTTCTGATGCATGCCCTCTTCTGGCATGCAGGTGTACATGCAGATAGAGCACTCATACACATAAAATAAATCTTTTAAAAAAATAAGTTAAAAAATCAAATAAAAGGGGCTGGAGAAATGGTTCAGCAGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGAAATGAGATTCAATGCCCTCTTCTGGAGTGTCTGAAGACAGCTAGTGTTCTTGCATATAATAAATAAATCTTTTTTAAAAATTAAATAAAAAATAAAATACCACATGGGCTGGCAAGACGAGTCAGTGGGTAAAGGTGATTGCAAATTCAGCACCTAGGACCCACGAGAGGAGAGAATTGATTCCACAAGTTATCATGCTCTGATCTCCAAAAGAATGCTCCCACATAGACGCACTAAATAAATGTAACAGAAAACTTTAAAATACCTCAGATGGCTTCCCGCTGTACTTACAAAAGACTCCAAAGGCCTCCACAGTCTGACCCTGCCCCTGGGGGACCTCACATACTCTCTTCCTTATCACCCTTCAGCCAGTGCTCGCTTTTCTCCTTTGGCTTGCTGGTGTTCCTGTGTGAGAGAGCCAGCTGCTTGCCACTTAGAGCTCACCTCTGGCCGGCTTTCTTGGACTACGAGTGTCCTAACTCTATCCCCTCAACGAGCCCTTCCCTCCCGACAACGCACACTGGCCTTGGGCTCCTTCGTTGCCTGGGTTAGGACTTAGTTAAATGAATTAGCATCTTCATGCTGAGCGCACAGATGAGTGGGTGGATTTTCCCCTTGAAAGGGTTGCTTGAAGGATTCTGACGTTTCCCCTAATGTAATCTCTTCTCTAGCCAAGTCTTAAGCATCTAGACTACAATGTTCTCAGAAGCAGAGGTCACAGTTGGGCTTCGTGGCTCATGACTGTAATCCCGGGACTATGGGGATGGAGGCAGGAGAGTCACCATAGGTTCCAAGCCAACCTGGGCTATGCAGTGAGTTCTGTGACAGCCAGGGCTGTGGTAAGATGCTGTCTCAGAAAATAATAATAATATAAATAAATAAATAAATAAATAAATAAAGGTCGTAGCTTAGATCTTGACACGGACACTGCATTGAAATGATCTTCTCAAGCTCGCATGTTAAGGATCTTGGGGTACTCGGGGTACAGTGCAGTGATTGATAGAGCACATTCTCAGATTCCCCCGAGAGCAGTCCTGGGCTCACCCGCTAGCACCAAAAATAAGTATTCAACAAGAATGGTAGTGAAGGCATGGAGCAAGATACTCTACTTGATCCTCCATCCATCTAAAATCAAATGTTTATAATTCATACATAATGTATAATCCACTCAATGCCTATCAGGCAAGGAACCAGGACCAAGTGGGAAACCCAGTCATTCTTCCTCCACTGGCTCAAATGGGCCTCCGTGGCCAGGGAACAGTGTAGGGCTGTTTCAGGCTTCCTGACACCTCCCTCCCAGGGTCTACGTACCTATCACTTGACTATGGTTCTCGGGCTCAGTCCCCTGGCAAGCTTGTGTGCCCAGGCAAGCACGCGGCCATGCAGCCTCCCTCCTCTCTCCAGTTTACTTGTAGGCATTTAGTGAAATGTGCTGTCTTCTTTCTCACCACAAACTCTGTTTTCTCAG
Seq C2 exon
AACTACCTCTCGGAACAAGACTTTGTATCTGTGTTTGGCATCACGAGAGGGCAGTTCACTGCTCTGCCTGGCTGGAAACAGCTCCAGCTGAAGAAAGAAAGGGGCCTTTTCTAGAGAAGGCGTGTGTCTGCTGCCCGGCCACAGGAGAGAGCAAACTAGCAGTGCCAACATCAGCAAAGAGTTCACCTACCAACTGAGCCCGACACGCGGCTGCTTTAGATACGACCCATCTCAGGATGGCTGACTGCCTTTCGAAGTCATCCTTGCATTCCTTGTGGCTGTCCATTAGATGCTGACAGCTTGCCTTTTGGCTTTGGTGGTTTTTTAGCCGAAGCTGTAGCAGAGAGCGTGAAGGCAGAAAGAGCTAGAAACTAAGCTTATTTAATGCATCAGGACCCACATCTGCTTCCAACTACACCCTGCAATCCCCAAAGCACTAGAGTGACCACACACTCCCTGCAGGCCAGGCTCCAAACGCCCAGGTCTACCATGTGCCACAGCATGTTCAACTTTACAAATAAAGAGGCCATGTGACTATGTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGTGACGGTGAGCCAAA
R:
TGACTTCGAAAGGCAGTCAGC
Band lengths:
357-2295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: