BtaINT0024430 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55999608-56002079:+
Coord C1 exon
chr5:55999608-55999724
Coord A exon
chr5:55999725-56001482
Coord C2 exon
chr5:56001483-56002079
Length
1758 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AACTTTGTTTTCTCTCTCAGAAT
3' ss Score
10.25
Exon sequences
Seq C1 exon
GATATGAGAGACACAACCCTTGCCCTGAATTCTGAGCCAAAATATTACCCCCTAGAAGTTCTGTTGAAAAATCAGAGTCAGGAGTTGCCAGAGGATGTGAACCCTGCCAAAAAGGAG
Seq A exon
GTGAGTGACTGACATGAGTGGAGCGCTGCAGAAGCACCATCTCGGAGTACGGCCAACAGTGTAAATACTCAGCAGACAACTGACCTACCCAGGAGCTCAAGCCAGAAACCCAGGGCTCCTTCTTGATTCTTTTTCCTCACCTCCCACATCAACCCATCAGCTAGCTGCCACCCACTGCTCTCCATCTCTCTGCTGCCAGTATGGTCCAGCCATCATGGACCACTGCCATAGGCCCCCAGTGAATTTTCACCTCTGTCCCTACAATCTGATCCCCATATAACCACCAGTGGGTTTTTATAGCAGATGATACTCTTCTATTTAACACACCTCGAATGGCTTCCCACTGCACTTAAAATCCAGAGTCCTCGCGATGGCCTCCAAGGCCCTATACAACCTGGCCCCTGCCCACCTGATTTCGTCTTACAGGCCAGTACTGTCTTCACTTACAGCCCTTTAGCCAGTTGCTGTTTTTCTGTTCCTCAAACATGAGCCTTTCTGCTGGCTACTGCTCCTGCCTGAAAAAACATCCCTCTCCCAGATCATCAGAAAGCCAGGTCCGCCTCATTGTTTAGGTCACAGCTGCAGGGTCACCTCCCCAGGAGGGCCTTCCCTGACCACCCGACCCTGCCTCCCTCAGCGCCTACAGTCCTTTTGTACTTGGTCACTCACTGTCTCTCTGCCCCACTCCCCGACACCTTCAAAAGCAGGGAGCTTGTCTGTATTGTTCACCATCACATTCTCAGCTTTTTAGCACCTAAACGGTGACTGGCAGATCATAGGCACAACTTAAGTTTCAGCTGATTTAATTAACAGTCATGTTGAATGAATGAATTTATTTTTCCCTTGAAGGGTCTCTGGGCTTCCCTGATAGCTCAGCTGGTAAAGAATGTGCCTGCCCCCAGTTCAATTCCTGGGTAGGGAAGACCCGCTGGAGAAGTGATAGGCTATCCACTCCAGTATTCATGGGCTTCCCTGGTGGCTCAACTGGTAAAGAATCCACCTGAGATGCAGGAGACCTGGGTTCAATCCCTGGGTTAGGAAGATCACCTGGAGAAGGGAAAGGCTAAGCACTCCAGTATTCTGCCTGGAGAATTCCATGGACTATATAGTCCATGGGGTCGCAAAAAGCCGGATACAGCTGAGCAACTTTCACTTGAAGGGTCTCTAAATTTTCCACAGTGTCTTATGTAACCAATTCTTAAGTATCTGGGCAACAACTTCCTTGAAAACAGAAACCATACCTTAATAATTTTACTTGGACTGAAAATATTCATTAATCATTAATAAATAAATGTTAGAATGTTATGCTCTCAACAAGATCCACTTGATCCTGCATTGGAAAACATCTGGCTAAAAAATGGCAGATTAAAAAAAGAAAAATATTAATAAAAAATGGCAGATGAGGGCATAAGGCAAGGAAAACTGTCACTCAGTTTAGCTGTCCATTCAGCCAAAGCCTAATGTTTAGCACTCATAAATAATACACAACCCATTTCTTGTCCTTCTGGCAAGACTGGTGCCAGGTGGGACTGCGAGCGCCGTGAACCCAGTCAGCGCTTCCGCAGGCCACGGTGGGACTCCACCAGCTGACGAGCTCGCCAATGAATAATTTAAGTCAAACACAGACTTTCTGGAAAATTCATTCTACTTCCCCTTTCAAGAAGCTACTTGGGACTATCTCTTGGCCCCTCTGCCCCCACCCCATTAACACTGACAGGTGCCAGGTCTTCTAACTAGAAACTTTGTTTTCTCTCTCAG
Seq C2 exon
AATTACCTCTCTGAAAAGGACTTTGTTTCTGTGTTTGGCATCACAAGAGGGCAGTTTGCTGCTCTGCCTGGCTGGAAACAGCTCCAGATGAAGAAAGAAAAGGGGCTTTTCTGAGGCAAGAAGGCATCTGCCTATTGCAAGATCCCAGAAGAGAGCAGTCAGTGCCAATGTAAGGAAAGAATTTCTCTAATTTCTGCCTAATGTCCAGCTACTTAATGGAGAGATAGTAGAGCCTGCCAATCACAGCATGTACTCCATTTTTCTCATCCCTGCATTTCTTAGTTGTCATATACCTAAAATGTTAGCTGCTCACTTTGAAATTTTTATGGTCTTCTGGCTGCAGCCTTAGCAGAAAACACTAAAACTGCAAGAAAATCTGGAGAAGTCAAAAGTAAGAGAACAGAAGAATTGTTTAAAGTGCTTAATTCTGGGGCAAGGGCCTAAGTTTGTTTTAAATTTTAAGGTTGGTATTTTCTATTTAACCCACAAATCATCAAAGTTATTCACATATATACCCTGAAGTCAAAATCTAAATGCTCAAATCTGTATGTGCCAGAAGTTTTTAAGTTTTCAAATAAAGATACCTATAAGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAACCCTTGCCCTGAAT
R:
GCTGTGATTGGCAGGCTCTAC
Band lengths:
355-2113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]