BtaINT0160600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35045930-35047805:+
Coord C1 exon
chr26:35045930-35046055
Coord A exon
chr26:35046056-35047392
Coord C2 exon
chr26:35047393-35047805
Length
1337 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
AAAGTTCACTTCTTTCCTAGGGG
3' ss Score
6.59
Exon sequences
Seq C1 exon
AAGCCAAGCGGCCAGTTAACCTCTGCAAACCCAGCCCATGCATGAACGAGGGCATCTGTGTCCTGCGCAACGGGAGCTACCGCTGCGAGTGCCAGGGTGGCTGGGAGGGCCCCCACTGCGAGAACC
Seq A exon
GTGAGTGTGGCATCAGCTCCAATGTAGGGGCTGGGGTGGTGTTCTCAGTCCTCCTCTTCCCCAGGAGTGTACCAAAGGAGGCTCTAGGGCATCGAAGGAAGGAGTCAGTCATTGGTTCATTCATACATGAAACATTCAGTGGGTGCCCCTACATCCCAGGTGCCATGCTGGGTGAGAGGAACAGAGCAGGAAACAAGACACGGAGACTCTCTGCCCTCCTGAGGGTTCTAGTCTAAGACACAACCAGTAAGAGCAGCATGTAGTGTATTAGATGGTGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGCATCAGAGAAGGCTCTTCAGAGTCCCTTGGACTGCATGGAGATCCACCCAGGCCGTCCTAAAGGAAATCAATCCTGAATATTCATTGGAAGGACTGATGCTTAAGCTGAAGCTTCAATCCTTTGGCCACCTAACTTGAAGAACTGACTCCTTGGAAAAGACCCTCATGCTGGGAAAGATTGAAGACAGGAGGAGAAGGGAACGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCGATGGACATGACTTTGAGTAAGCTCATTGTGTTGGTGATGGACAGGGAAGCCTGGTGTGCTGCAGTCCATGGGGTCGCAAAGAGTCAGACACAACTGAGCGACTGAACGGAACACACTCTGATGAAATTCTGGGGAGACTCTTGGGGAGGAGCACAGTGGACACAGAGTAACCGGAACACAGGCAGAGGATGTGGGCACAGGTTCGAGTGGGTGGGTGGATGGGGCAGTGGAAGTTGGTGGGAGTTCTTTTTTTTGAGTGTCTCTATTTGCTCACCAGAGGGTGAGGGCACGGAGGAGGTGCTGGAGGTTTGAGGAGAGAAGAGAATTAGTAACCATCTAGGAGAGAAGGCGGAGAAGGCAATGGCACCCCACTCTAGTACTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTGAGGTCCATGGGGTTGCGAAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGGAGAGAAGGAGGCTAGAGTAGACATAGAAAAACGATTGTTGCGCAGCCTCCTAGGCCCCCTGTGGCGGCTGCTTCTCATGAATTTAAAGGTAGAAAAGCCAGCAGCAGCCAGTGGACGCTTCCCATTAGAGCCCTGCATTTGCGGGCCCTGGCAGAGGTGGTTTTCCTAATACGGGGAGGGCTGTGAGGGGCACTTCCTGCTTGGCTTAGCCTAAGCGCAAGGCACAATGGGGCCCATAAGGTTGCTAGTTGGTTAAGAAGAGGACTCAGACCCTCACGTCCTCAAAGTTCACTTCTTTCCTAG
Seq C2 exon
GGGCCTTGAGAGGAGATGCCCTCAAGGCACGTGGCTCCAGCCGAGAGCCTGCAGGAGGGCAGCCACCGCGCCCCTCCCGGCTGGGCCTACAGAGAAGGCCTGGGCCCCCTGGGCGCTGAAAGGGAGCCTGCCCTCAGCACAGCACCCTGTCTGTGGTCTCTGCCTCCAGCCCCGTCTGAACCCTCCTGCCCACTGTCCTGCCCCAGGGAGAAGAGAGGGCTCAGCTGCCAACAGAGCTGCCCAGGGACATGGTAGCAGCTGGTTGCCCCCCTCACAACCACACTGAGAACTCATCACATGTTTGCTGACCTAATTGTGCACTGTGGAGCTGGTGCCGTCTGCCGCGTGTCCCCCGAGGAGCAGCAGAGGAACCTGGAGACTTCTGATGGCCTGTTTGAAGCTCACGTTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860:ENSBTAT00000009011:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATGAACGAGGGCATCTG
R:
CAACCAGCTGCTACCATGTCC
Band lengths:
354-1691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]