GgaINT0044703 @ galGal3
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29210643-29211023:+
Coord C1 exon
chr6:29210643-29210765
Coord A exon
chr6:29210766-29211003
Coord C2 exon
chr6:29211004-29211023
Length
238 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
TTTCTCTTCCTCTCCAACAGGAG
3' ss Score
11.68
Exon sequences
Seq C1 exon
AAGCAAAAAGCCCTGTGAACCTGTGCAAACCCAACCCGTGCATGAACCAGGGCGTGTGCATCCTCAGGCCAGGAAGCTACTGGTGTGAATGCCATGGATGGGAAGGACCCCACTGCGAGAGCA
Seq A exon
GTAAGGCTCAGGGGGTGACAGCTGCAGCACCTGCTCAGCCCCCCCCAAACCCATCCCAAATCTCCATCCCTTCCTTAGCAGAGAGCTGGCTGTAGTTCCCTGGCAGCTGTTTGGTGGCTGGGTCTTGGTGCTTCTAACATCTGTGAGCTAAGGCTCAGAAGGTGTTTGCTGGGCTGTAAGGGACTGAGCATGTCCCTAGAGTGCTTACCCCACAGTCGTTTCTCTTCCTCTCCAACAG
Seq C2 exon
GAGTTCCCCGAGGTGATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000033088:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGCCCTGTGAACCTG
R:
GGAATCACCTCGGGGAACTC
Band lengths:
141-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]