MmuINT0174340 @ mm10
Intron Retention
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56909690-56912078:+
Coord C1 exon
chr19:56909690-56909815
Coord A exon
chr19:56909816-56910614
Coord C2 exon
chr19:56910615-56912078
Length
799 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
GAATTCACTTTCCTTCCTAGGCA
3' ss Score
8.58
Exon sequences
Seq C1 exon
AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
Seq A exon
GTGAGTGGATCCCTACTGTTCAAGCACAGATGGGGGTGGTCTCCTTAGTCCTGCTGAGTTCTACAGACTCAGCAGGAGGCAGGTTGGGTTATTTAATCATTTATTCACTCCCCTATGAAACACTTGGAAGGGTCTTACATATCTCAGACCGTTTTTGTTTGTTTTGTTTTGTTTAGAGTAGGAGATACAGGCTGATGGATAAGAGAGATAATCTGCCCTTATGAAGCTTCCATTTTAGGGAGGAGACAGAGTGAGCAGTGTAACAGTATAGAGCATTAGAATGTCACTATTGCAATACCATTACTATTGGGACTATTAGAATGTTACATTGGGAGTTCCGTGCATTGCAAATAGCCATGACAGCGGGGAGGTGGGCCTTGGTTAGCAACATAACACTGCACCAGTAACAGTGTCACAGGATGTGAGGCCAGAGATGTGTAGATGGGTAGACACATTATGGCAGCTAGTGGCCATTCTTTCTTGAATATCTGTAGTGACTGAGCGGAACAGCCTGCTGGAGGGGGGTGAGATAATAGGGCTTTGGGAAGAAAGTTGCTTTAAGGAGACACAAGTAACAGACTGGGGCCTCCTTAGATCAGGCAGAAATCAAGACAAGAAGACATGGCTTTTCAGCCCTTGGTACACACTGGCTTCCAGTGGCCAAGGAGGAGGTGGGGGCAGGTGGGTGGGAAACTGATCTGATACCTTTCACTTGGGGATGGACTTGTAAAAAGGACACAAAGTAGCTACCTGCTGAGGCGAAGACTCAGACACCCTCAGAATTCACTTTCCTTCCTAG
Seq C2 exon
GCATCTTGAGAGGAGATGCCCCCATGGCACGTAGCTTCCACCAAGAGCCTGCAGGACTACAAGGGCCAACCCCCTCGCAGCAAGCTCCCAAGCATCTTAGAATCGGAAAGGCCCTGTCCTCCGCCAAGTAAATCTCCCGGGGGCCCTGGAGCATCAGCTTCCAGCTCTGCCACAGGGGACACTGCTTGGGACAGTAGCAGCTGTCGCTATGGTGATGTTGGGAACGACTACTGCGTCAGCATTTATCCCCTGAATCCGTTTGTACCTTGCTGAGGTAAGCTGCCTGTCATTTTTCCTGAGGATAAGAGGCAGGCCAGAGAGATCTGACGACCTGCTTGAGGGTCATCACAGATGCTAGACAGATGTTCCTGAGGTGGTAGCGCTTTGAAGAAGACTCTGTCAGAGCTCACCGCCTGGTGATTGGTGCAAAAAGTGGGTTTCTCCCTGTTCCAAAAGACAGCTCCTGTGGATTTCATTTGCAAAGGGATTATGTGTCATTTGTGACGTTTTCTGGTGACCAGATCTGTGTGTGGGAGAGACCTGGGAAGGTCTCAGACAGCCATTTGACCAATTACTCAGTTTGCACGTAGGGGAGGGACATGTGTGAACAGCCGTGTACGATTGGTCTGGGCGCTGAGCAACGGCCTCCAGAGGGGCTTCCTTTCAGAGATTACTCAGGAGAGAGTGGCAGTGAGTGCTGCCCTCCTCTTAGTGGTGGCAATGATGGGCAGACTTCTCAAACTCAGCAAGGGAGGGATGAGGGGTTGCCCAGGAGGTTTGCTTTCAAAGCTTACTGTGCTGCTCTGTTTTAATGTGCATCTCACGCCCACTCGGTAATGTCTCAAGACAGATTGGTTGGTTGTTCGTCCATCAGGACTGTATCCGCTGGCAACGAGGCTTCTTTGGAATATCTTTGGGAAACTAGGTACTTAACTGCAGCGCTAACACATCAGTCTCCCCCCACACCCCTTCCCCACCCTGCCCCTTTCTTGTGCTGTTTGAAGCTGGGTTTTCAGAAGAAGCCATGTGTAGCGCTCTGGGAGATGAGAAGCATTGGTAAGGGTGTGTATCTTTGTGCAGCCAATGCTGTAAACTCTGTTTGTGTTCTGTGTGCCAGGCTGGCTGGCTGAGGTGCTACTCCACGTCTGCAGGATGCTCTCCCCGTCTCTGACCCACATTTTCTTCCTTCACATTTATACACTGGGGATGTAAACTTTACGTATTGTTATATTTCAATCATCGAACCAATATGTAGACATTGTCACAGCAGAATAGTGCTGATGTCTTCGTGGAACACCAGGACTTCCCAAACACCCGTGCAGCTGTAGTCACAGTACCTTCCTGTAAACTCCTGTCCTGGTCTGTTATATTCTACTTTACTCTGGGTTGTCAGTACCATGTTCAAGGAGTCAGAATTTGGTCTTGATGGTTTTTAAACATAAAATAAAACATTTATGTCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082:ENSMUST00000026068:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.605
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTGAAGAACGGCAGTT
R:
CAGGCAGCTTACCTCAGCAAG
Band lengths:
355-1154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types