RnoINT0164000 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277728045-277730389:+
Coord C1 exon
chr1:277728045-277728170
Coord A exon
chr1:277728171-277728971
Coord C2 exon
chr1:277728972-277730389
Length
801 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
AGAATTCATTTTTTTCCTAGGCG
3' ss Score
5.71
Exon sequences
Seq C1 exon
AAGCCAAGCGGCCAGTCAGCCTCTGCAAACCTAGCCCATGCATGAATGAAGGCACCTGTATCCTGAAGAACGGCAGTTACCGATGCGAGTGCTGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
Seq A exon
GTGAGTGGATCCCTACTGCTCAAGCATGGATGGGGGTGGTCTCCTTAGTCCTGCCAAGTTCTACAGACTCAGCAGGAGGCAGGTCGAGTCATTCAATCATTTATTCATTCCCCTATGAAACACTTGGAAGGGCTTACAGGCTGTTTGTTTGGTTTTCTGTTTTGTTTAGAGTAGGAGATATGGGCTGATGGATAAGAGAAAGCCTGCCTTTATGAAGTTTCCATTTTAAGGAGGAGACAGAGTGAGCAGTGCAACAGTATCGTGCATTAGAATGTTACTATGTAACACTATTACTACTCATACTGTTAGAATGTTACATTAGGAGTCACGTGCATTGAAGACAACCATGACATCCGGGAGGTGGGGCCTTAGTTAGCAACATGGAGAGATCCAGAGTATGGGGGATGGTGTCAAAGGATGTGGGTCCAGAGACATGTGGGTAGGTAAACACACTGTGGCAGCTAGTGGCCATTCTTTCTTGAGCATCTCCGGTGATGGTGACGGGAGCAGAAAAGCCTGCTGGAGGGGAGTGCAATTACCAGGGCTTTGGGAGGAAGTAGCTTTAAGGAGACACAAGTAACAGACTGGGGCCTCCTTAGAAATCAAGACAATTTGAGTTATAGCTTCTCAGCCCTTGGTACACACCGGCTTCTAGTGGCCAAGAGGAGGTGGGGACAGGTGGATGGGAGCCTGTAGTCTGACACCTTTCACTTGGGGATGGAGCTGTGAGTAAAAAGGACATGAAGTAGCTACTAGCTGAAGCGAAGACTCGGCCACCATCAGAATTCATTTTTTTCCTAG
Seq C2 exon
GCGTCTTGAGAGGAGATGCCCCCATGGCACACAGCTTCCGCCGAGAGCCTACAGGAAGACAACAGCCAACCCCCTCCCAGCAAGCTCCCAAGCATGTTGGAGTCTGAAAGGCCCTATCGTCAGCCAAGTAAATCTCCTGGGGGCCCTGGAGCATCTGCTTCTAGCTCTAAGAGCCGTTTTGCCCATAAGCCTCTGCCACAGGGGACACTGCTTAGGACAGTAGCAGCTGTCACTCACTGTGGTGATGATGGAAAGGCCTGATGTGTCAGTATTTACCTCCTGTATCTGTTTGTACCTTGTTAAGGTAAGCTGCCTTGTCACTTTTCCTGAGGATAAGGGGCAGGCTGGAGAGATCTGAAGACCCGTATGAGGGTCATCACAGATTAACTAGACAGATGTTGAAAAAGGTTTCTGTCAGAGCTCACCACCTGGTGATTGGTGCAAAAGGTGGGCTTCTCCATTTTCCAAAAGACAGCTCCTATGGATCTAGTTTGAAAAGGGATTATGTGCCATTTGTGATTTTATTTTTTCTGGTGACCAGATCTATGAATAGGGGAGACCTGGGAAGGTCTCAGACAGCCATCTGACCAACTAACCAGTTTGTACATAGGGGAGGGGCATATTGTGGGAACAGTGTGTGTGATTGGTCTGGGCGCTGAGCAGTCACCCTCCAGAGGGGCTTCCTTTCAGAGTTTACTTGGGAGAGAGTGGCAGTACGTTGGCTGCCCTCCTCTTAGTGGTGGCAGTGATGGGCAGACTTCTCAAACTCAGCAAGTGAGGGGTGAGGGGTGCCCGGGAGGTGTGCTCTCAAACCTTTCTATGCTGTTCTGTCTTAATATGTGTCTTGTGCCCAGTCGGTAATGTTTCAAGACAGATTGGTCATTTGTCCCTCAGGACTATTTGTATCCCCTGGCAACGCAGATTCTTTGGACTATCCTTGGCAAACTAGATACTTAACTGCAGCACTAACACATCCGTTCCCCACCCCCCTGCTGTTTGAAGCTGGGTTTTCAGAAGAAGTGATTTGTAGAGCTCTGGGAGCTACAGGACAGCATCTGAGAAGCACTGGTAATGACACGTCCCATGTGCGGCCAGTGCCGTAAACTGTCCGTGTTCTGTGCGCCAGTCTGGCTGGCTGAGACACTACTCCAGGTTTGCAGTATTTTTTCCCCTTCACATTTACACTGGGATGTGAATGTGACATACTGTTACATTTCAATCATTGAACCGATTTGTAGACGTCACCGCAAAGCAGTGCTCACTTTATCATGGAACACTAGGGTTTCCCAAACTTCTGCCCAGCTGTTGTCATAGTACCTTCTGGTAAACTCTTCTCTGCGTCAGAACTTAACAGCTTTCTTGTCATTCTGCTATATTCTACTTTACTTTGGGGTTGTCGGCACCAGGTTCAAGGAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.771
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGAATGAAGGCACCTGT
R:
GGCCTTTCCATCATCACCACA
Band lengths:
346-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]