DreINT0174583 @ danRer10
Intron Retention
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30197406-30199602:-
Coord C1 exon
chr12:30199480-30199602
Coord A exon
chr12:30197546-30199479
Coord C2 exon
chr12:30197406-30197545
Length
1934 bp
Sequences
Splice sites
5' ss Seq
CACGTCAGT
5' ss Score
5.37
3' ss Seq
TTTGTGAACTTGTTTTTCAGGGA
3' ss Score
9.48
Exon sequences
Seq C1 exon
ATGTGAAGAAGCCTGTAAACCTTTGCAGTCCAAACCCCTGTATGAATGATGGCATCTGTGTGATGCTGAATGGGAGTTACCGCTGCGAATGCCGTGGCTGGAAGGGTCCACACTGCGAAACAC
Seq A exon
GTCAGTATCAGAAACTGCTAATTAGCCTTTCTAGTAATGGATACTCTTGTTTTACTGTTGCCAATACAGGTGTTTGACAAGTTTCAAAGGGAAGGTAAAAGGTTCTCAGGTGACCTCAGATTTTTTGAGAGGGAATTAATCTGCTTTTTTCATTGGGTTTAGCTACCTTTTACCTTTACAAATATATAATTCAGAGATTTTAGTTTCATTTTTAGTCAGATGTGTAAAAAATCAATATTTTGAGGAATAGCCCTCAATTAAAACAACAGAAAACATTTGTTAATCAGATTAATTGATAATTTCTGACAATAAAACTGGCAGTTTTTATTTTTATTTTGATGACTGTTATGTTTATTTTAATTTTGACTCATATTTGTAGATTTTTACATAGTAAAATTAAACATACATTACCATTTTACTCAAACCCTTACCCAATAAATGTAGAAATATACTGGATTCTTTGATTTGTAAAATAAGACAAGAATATGTCCAAATATTACATTTCAATTTAAATATTGGTGATGTTTATCTAATCAACAATCTAGGTTAAGTAATTACTTGCATAATTCCATTTTTGGGTGAACTAAACCTATGAGTTATGTACAGTGGGGACGATTTTTCTCAGAAAACATATTTGTAAAGACACTGTTAATCATTTTTAACCAGATGTTGGTAACAACCAAAGAAATCCATATTTGCAAAGAAAACAATATTAATTCATTTACAAATAAGGAAATGAAAAAGGGAAAAAAGTATTAAACACATGAAGAAAAGGAGGTGTAGAAAGGCAGTGAAAGCCCAGACAACTCTCAGTAGTTATTCAGCAACCCTCTGTCCTTCCTTATTGTAAATTAGACCAACATCTACATTACCAGGATGATGAAGATGAAACCAGAGTGGACATTTCAGCAAGACAATGATCCAACACACAGCCAAGGACTCTCTCAAATAATTTCACAGAAAGAAAATCAAGCTGTAGAATGGCCCAGCCAATCACCTGACTTGAATCCAATATAAAAAACAAAATAAAGCTCAGATTTGATGGACGAGACCCACAGAACCAACAAGATTTTCACACTTTGTTGAAGTCTGTGAAAAACTCACATCTGAGCAATGCACTTCATTCACCATATGAGAGGTGTCTTTATGCTGCCATCACCAATAAAAGCCTAAATATAGTATAAATAAAGTATTAAATATGATTCAGTAGTTCAGTTCATTATCCTTGTGTCATTTCATTGTTATTACACATTACTTTTTTTTTTTTTTTAGATTTTTTTGTTTGTTTTATTTTTATGTTTGTATAGTTTGTGTTTGTACCAAACTCTGCTTCAATTCTATGTAAACAGCTCCTTTAGAATATTTTTTTCCAGAAAAAATTGATGTGTTGAATACTTTCCCCCCACTGTATATTATACGCTAATCCATTCAAGATAATGAGGAATTTGATCATTCTAATAATGGTAAACGCATGTTCTGTTTTTGGAAGTACAGTAATTGAGAGTTTTTATAAACCTCATGCTCCTTTGCTTTACCTCACATCTGTTCTTCATCTTTTTAATCATTATGAGATGCAACAGAGTAGCACCTTTAACACAGTATAACCAGAAAATTAAAAACACACTGATCACACGCAGCGGAGTTCCAGCTCTTAACTGCTAATGATATAACTTTTCATTCCAGAAAATTGCCAGAATGCATTTTAGGCATTTTTTAAAAAAGGGCTTGTTCACGCATCTTATTATGACAATTTAATGGAGATTTCTTAAAGTCTGTATGAGAGATTAGTGTGTCCCACGTGTGATAACTCTCAAAATGACTTATTCGCTTTTCTACTGTATGCCTGCTGGATGGTCGTAATTTTGGTGTTATCAGAATGGCAGGCTATATTTAGGATGTTTTGATTGATGTGTTTTTGTGAACTTGTTTTTCAG
Seq C2 exon
GGAGCAGAGAGCAGCCATCCAGAGGAGATCTTCCTAAACCTGCAGGCCTGAGGCGACGGCAACCCAAGACTGAGAAAGAGCTGCTGCAGCGCTATAAAGAGCAGCGCAGGAGACACACGTCCAAAACACAGATCAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441:ENSDART00000152985:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAAGAAGCCTGTAAACCT
R:
TATCTGATCTGTGTTTTGGACGTGT
Band lengths:
262-2196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]