BtaINT0160822 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104639056-104641836:+
Coord C1 exon
chr5:104639056-104639073
Coord A exon
chr5:104639074-104641694
Coord C2 exon
chr5:104641695-104641836
Length
2621 bp
Sequences
Splice sites
5' ss Seq
AAGCTAAAT
5' ss Score
0.61
3' ss Seq
CTCTCCCCTCCCCCTGTCTTTCC
3' ss Score
-8.15
Exon sequences
Seq C1 exon
TTGTACCAAGGAGATAAG
Seq A exon
CTAAATACAATATTCAGACTTCTGATTCCCCGGGAAACTTAAGGATGTCCATCAGGGGAGGTCAGAGCAGGAAATCAGATCGGAGTAGATTCAGGCCCCAAGGTTTTGCTTATGAATGCTTGCGGATTCTCTCATTGACCCTTCTTTTCCTGGGCATTGTCAGAGATAAGGCAAGTGCAACTTCTTACTCAGATTAGAGTGCTCTTGAGAAAACACAGAGAGGCTGGGGGAAGCATTCCCACCCATTTCCCTGTGACGGGGTCAAGACCTGTGATACACAGGGCTGTGTCACTTTGTAGAAAGATGACAGCATCTGAAAAATCCCTTTCAAAAAGGCTTTTTCAGGACTTCCCTGATGGTCCAGTGGTTAGGAATCTGCCTTGCAATGTAGGGGATGTGTGTTTGATCTCTGGTCGAGGAAGTAAGATCCCACATGCTGCGGAGCAACTGAGGCCACGAATCGCAGCTAAGACTCGATGAAGCAAATAAACAAGTATCTTTTTTAAAAAGGCTTTCTCGTGACACCTGTGGATTTGGAATTCCAGCTTGGCTGCAATCAGCCGGGGTGACCCTTGCCCACCCTTGCCCCTAATCATTGCCCGTTATGCTCTGATTTCCACAAAGACTGACCCCTTGTTCGTGCCCTTCTTGAGGGGCAGTGCATTGGGAAGTCATGACTTGTTTTTGCTCGCCGCTCTGACACCATGCGTCCATGTTTTCCCCACAACAGCCCATTCTCTGACTTACTGGACGCCACCTCGGTGCCCTACACTTCACTGCATTTCTGAGCCTGACTACCCGGGGTTAGTGCAGAACCCGGAGGTGAAGGTCTGCAACCAAGCGCCCCTACTTCTGATGCCAGCCATGGTAACTGCTAGAATGGCTCACAGAACTTGGGCAAACACTACACTTACTATTACCAGTTTATTAAAAAAAAAATATGAAGGATACAAACGCTAGATGAAGAGGTACACAGGGCAAGCTCTGGAAGGGTCCTGAGCCCAGGAGCTTCTTTCCCCGTGGAACGGGGGTCACCACCTCCTGAGTGTAGATAAGCTCACCAGTCTGGAAGCCCTCCCAACTCTGTTGTTTATTTTATTTTATTAAAAAAAATTGATTTATTTGGCTGTGCTGGGTCTTGGTTGTGGCATGCGGGATCTAGTTCCCCGACCAGGAATGGAACCTGGGCCCCCTGCACCAGGAGATTGGAGTTTTAGCCACTGGACGGCCAGGCAAGTCCTGATTAAGGGTTTTAATGGAGGTTTGGGGGCTACTTGCCCTCCCCCTGACTTCCAAGGGCAGGGCCACACCTGGACCCCAAGTTGGGGTCCCGCCCCATACCCGCTGTGCCTTTCAGTGCAGATATAGGCATGAGGTGGTAGTCAGGGGCTGATAAGCCTGGTCTTTGACAGGTGGGCAGCTGGCACCCTCCCCCACCCCCCACCGCCTTAGGCCCTTTGGGGGCTCCTGACTGTGTGACAGGCCCAGCATCAGCCCCTGGAGAGGGAATTGGCTGTAGGGCCCACTTAGGGGGAACTCGGGGTGCAGAGCAGATCCGTGCCATGGAGGACGAGTCTTTGCTGTTTGCAGGCTGGGGGTGACAGGGCCGGGAAGGAGGGCTCCCACTTTGTGGAACAGCCATGGCAAGTGTCTGGTTATTTCTCTGTAGAGGAGAAGGTAGAAAGGGGACGCGGAGAGGGGAGCTGGGAAGGACTCCAGATACCGCCTGGGCTTCAGTGGGGCCATTGTGGGCCTCAGGATGGAGATGCCCTGAGTGGGGCGGGGCCAGCAGGCATCACTGGAGATGATGGCAGAGCCCCCCTCCCCTCCACAGATGGGCTGTGCTCCAGGGTGTGTTGGGTCTGCACCACGGGCTGCTCCAGGGCCTGGGGAGGACAGAGTAGTGGTTGGATCCAGGGCAAGTCGAGGGCTGGGGCTGCAGGGTGATGCTGGGGAGTCCTCGCTGCCACTCCCAGCTGTGTCAGCCTGGCTGGGGAGCTGGCTCGGATGGTGGTGAGATAGTGGTCAGATGGTGTCCTGGGCCCCCATTTGCCCTGAAGTCCCAGCAGGGGTTTGCCCATGAGGAGGCCTGAGAGCTGCCCCTTGGCTGGGCAGGGGGTGAGGACAACATGCTGGCCCCTGGACTGCTCGCCCCATCATTGCTCTGGGCTGGCTTTCTGCCCTCTTGCCCTCAGGGACTCTCCTGGTGGGGGGCAGCCCCCGTGATAACAGTGCAGAGAAAGGCTTCTGACCCCAGCAGAGCAGAACCCAGGGAGGCAGTGGGGAGGGCTGGGAGCCGCAGTGAACCCAGAACCCAGAGCTGGAACTAACCCTGGCTTCTGACCCAGCCCCACCCCCAGCGTCACCACCCCCCACAGCCCAGCCCCCTGGGTGTGAATCCCTGGGTGTGACTTCACTCCCTGGGTGTGACTTCACTCCCTGAGGCTCAGGACTGACCCACTGGGCCTTGACCTCCCAGGGCCAGAGGAGTGGAGCCTGAGTAGAGTCCTCCTGTGGGGCCCCTTTCTAGACCGTGGTGGGGAGAAACCCAGAAAGTGCCCACTACTGGGACACCCCCCAGGGGACCCACTGGGACACCCCCTCTCCCCTCCCCCTGTCTT
Seq C2 exon
TCCAGGAGAGTGTCTCATCACAGGACAATCCCACTTCAAGAGCTTTGACGACAGGCACTTCACCTTCAGCGGGGTCTGCCAGTACCTGCTGGCCCAGGACTGCCAGGATCACTCCTTCTCCGTCGTCATAGAGACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265:ENSBTAT00000016273:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(27.9=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]