MmuINT0174480 @ mm9
Intron Retention
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125541652-125548636:+
Coord C1 exon
chr6:125541652-125541698
Coord A exon
chr6:125541699-125548499
Coord C2 exon
chr6:125548500-125548636
Length
6801 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCTCTTCTGGGTTCTTCCAGGGG
3' ss Score
9.9
Exon sequences
Seq C1 exon
TATCTGCAGAAACAGCCTATGGATCTGCAGCAATGAGGAATGCCCAG
Seq A exon
GTAGGCTTGGGACCTTTTCTCCCTTTCTTCCCGTTCTCTGTGGAGAAGTGTGATTCCCCTCCCCTGCCCTGCTGGATAGAGAGCCCACAGCACAACAGAGAGTGACCTCTGCAACACCTCCTGACCTCAGCTCTGGCTTTGGATCTCAGCCCCGCTGTCTGCTCACAGTTGGCCATGCTAGCTCCTCTACAGCAGCTGAAGCGGGAGTAGGTGGCCCTGCCCAACTCCTGTTTGTTCTGGGGATGAAGTTGCTGAGCTGTGAGACCTGAAGGGCAGGGCTGACCAAGCAAAGAGAAGAGAACTTCTTTGGAAAGTCAAGAGGAAGGTTTCCATAAGCCTTTTGGCTTGGAGTGAGAGTATAACCTGAATTTTAAGGACACAACTAAGTTTCTGTAGCCCCAATACACTAGTTAAACAGAACAACAGTGAAGGGCGGAGGGTGGAGATTTATTCAACACTGGGAAGAGGAACAAATAAAGGAGTGTCCCCAAGCCTTCCCGGGAAGCCCTTATTGCTGTCAATCCGGTTTCTCCTAGCTGCCCTCTTCTGCGGCAGGTGCAGCCTCACCCTCCTGGATAATTGTCCTCAGCTGCCAGGGGCTCTGTCCTGGGGAGGTTGTGTTATTCCAGGAATCTGGGTAACTCAAGAAGAAAGGTTATTGCTGAGCTAGCTCTGTACCTTCCGCCAAGGTAGAGGAGACAGACACTGGGAAGGTAGAGATTGATGCCCACAGTTGACCCTGTCCTTAGCGACTTCGTGGACCCAGAGGAGGAGTCAATGATTTTTTTTTTAAAGCAAAATCTGCTTTCTAGTGATTTTATTTTTCGTGAGTTTCATTGGAATTTTCTAGAATGCTTGGTATGTTGACCACAGTATGGTTCAAATGCTGAGAGAACTAGGGTAGTAGCTACCCTTCGGGAATCGGCAGAATTGGGGCCTGCAGTATAGCCTCTGCCCTCTGCTTTTGCCTGCTTAGCCTCAGTTCTGTTTACTGCAAACCTTGCCCATTCAAAGCTCCCTCTGCCTCTCCGAAAAGACTCTGGACTTTTCCCTTCTTGTTCTCTCATGTGATGTTTTCAGTATGCTGGGGACGTGCTAAGAGTTTATCCTGCTACCTCACTGCTACAACCCGGAGACAAGCCAGTTTGTTTTCTCCTTGTAAAAGAGAAAACAGCAAGACAGGTTAAGGAATTTTCTCAAAGTCACACAGCTGCTCAGAGGCAGAGCCAGGACCACAACTCAGTGTCGGCTGGGTTTTCTACCTGTCCTTTCTCCCCTTTGCTGGCCCTAGACTTAGGTAGGTCAGAAGTGACGTGGACACCTGGACGCAGGTGGATTAGAGGCTTTAGGGTCATTTGGGATCTTATCTAACACATATCACACTGGGAAAATTCTGGAATTTGATGGAAGCTGGATCAGGAATGACCAACTAGTCTTGGTATCCTTTGGGTAATTCTAGAAGAAATCACTTTTGAAAATACTTTTTTTGAGCACAACCACACCCTAGGTAGGAGTCTGAACCCTCCAATAGCTGAGCGGGAAGCACCCAGTGCACAAGACCTGTGAGCCACAGCGGACAGAATTGGGAGCTTAGCTGGCTGTTTTCATCAGACCGACTTGGAGCCGAAGCAGTCCTAGTACCAGCGACTTCAGGAAGGGGCTTCTTTCCATCGTCCTTCCATTCATCCATCCACCCAGCCACCGCTATGCACGGAAGCCATGAAAGTCTTGTCTGGACAAAATAATCGCATGGTCTAGGGTTCAGTTGTTGAGGATTCAAGACAAGCAGCGTTCTGATGCCTGGAAGGGCAGGTAGCCAGTTGCGACTTGCGGTCTTAGGAGTAGTTCCATGATTTGCTGACAAAGCTATGAAAACTGTATCTCACTCTCAAAAACCCTACTCTGCTCCTCGCCGCACTCTGTCCACCTCCACCCATGGCTGCCAGACTTAGGTTTCTCTCTCTACAGTCTTATCACAGTCCTGTTGCCAGTGGGCTGTCTCATCTCTCATAGAATCGGGAAGAGCTACTGATGGGAAGGCTCTGAAATGGGATACGCCTAGCTCTCCAAGGAAAAACCAGAGCAGGGCTTCTGGGAAGATCCTGGAGAGGCTGTGTTGTGCATCTCAGAGGACCAGGCTTTCGTTCTGTACAAAGATGAACATGTGACACTCATCAACCCTGGTGCCACAGATCCCCAAACATAACAGGTCACCCTGAAGGCTGCCTAGAGCACAGTGCTGAGTGTGGGGACGGAGAAGGGGGAGGGGAAGGGAAGAGCTTAGGAGGGCAGCAGTCTGGTGGGATGGGGAGGGGCTGGTGACTCCCATGGATGGTGTTCTAGAAACTATCTGCTCCCTGTTTATCTTTGGGTATCCTCAGGCAAAACTGTGGCGCATTGGTCAGCTTTGTGCTACTACAACAAAATACCAGACAACGGAGCGTCAGGTTTAAGATCAGGTGGCCCCGTTCACTAGGGCCTCTGATGATGAAGACCCACAGTTGGGTACTGGGCGTGTGGGTGGTTTCCTACCCCTCTCATTCATTCACTTAGCACCTTGTACAGTGTCCACCTCCTTTGGTGCCACAACCTTCTGAGAGTGTCACTGCCAGGACCAAGCTTTTAACAACACATGGGCCTTTGGTGGACATTCAACACCTATGCAGCAGTGTGTGGTTTCTATGTAGTCTGCAGGCATCCTGTAACTCCTTCTCAACTTTTACATCCTCAACACTGCCAGGAAAACCCCGCTAGGGATCAGGAAGGCCCTGCTAGGTCAGTGCCCAGGAGCTGTGAGCATCCTGTTAGTGTGAACGTGGATTCCTCCACGCTTCCGCATGGCAGCTACTGGAGGCTGTCCTTCAGATGTGTACAGCCCTGGGTGTGCATCCTGGAGGCTGTCCTTCAGATGTGTACAGCCCTGGTTGTGCATCCTGGAGGTTGTGCATCCTGGAGGCTGTCCTTCAGATGTGTACAGCCTTGGTTGTGCATTTGATGTTCCTCATGGAAGGCTGTGGCACATAGGTTTCTAAGTGAGGAACACCTGAGTAGAGGGCTTTCCATTTGTGTTCAGAATAAAAATGGCCCCGGATGGGGGTGGAAGCATGGGCTTCAGGTGTGGGTGGTTTGGTTGGAAAGGGCACTGGCTAGCTTTCCAGCAGGGTTTCCTAATCTGTAAAACATGGTGTCCCCAGTCTGCTTTCTATTGCTGTGATAAATGTCATGACCAAAAAACAACACGGGGAGGAAGGGGTTTATTTGGCTTCTGCTGCCACATCGTCATGGGAAGTCAGGGCAGGAACTCAAGCAGAGACGGTTGTAAACATTTCTCACTGACTTGTGTGCCACGACTTCCTCAATCAGCTTTCTTATACAACCCAGGCCTACCCTCTCAGGTGTGGCACCACCCACAGGAGGCTGGGCTCTCCCATATTAGTGATTAATCAAGAAAATGACCCACAGACCAATCAGATGGAGGCAGTTTCTCAATAGAGGGTCTTGCTTCCTAGATGTCTATGTCAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATAGCTTCATTCCATGGCTGCTGTGAGACCTTTAGAACTCCATAGCGAGTCCCCTGTCAGGATGGGCCAGTCCCATCTTTCCAGAGCAGGGAACATTAACAGTTCAGAGAGGGACTGAGACCCAGTTAAGACTTAAGCAAGTTCAGAGAGGGACTGAAACCCATGGCAGACCGGATGGAGCAGGCATGGGGCTGAGAGACTTGTGCATGCTTGTTAAGTGCTCTGTCGAAGGAGTGATACCCTACCCCCCCAACCCCCAACCTCCTGTTCAGGATAATTTGATGGATTATAATTTATCCCTGTGATTTCACCCTGAGATTCAAAGTCAGTCTGCTGTGACCCTGCAGGAAGAATGATACACAGGGTCTCCCTGGCTAACAGGCAGCTAGGGACTTCTCCCTCAGGAAAGTGGGCTTTGAGGCACTTGGACTTACCTGGGATTCTGTCCCCTGTTCCCCCAAGGCCTGGGAGTGTCCAGTGGCCTGTCCACACCCTCTCTGGGCTCTCTGGAGGTATACCAGAGTTCCTTCAGGCCGGGCACGGACTGGTCAGTAAGCAATGCATTGTGTTTCTTAGTCAGGCTTTCTTCCTTCTGTGTTGTCCTCCTGCCCCTTGGCAGGTGACCACACTGTCCAGAGAGGCTTGGTCCTGAAGTGAGTAGGCTTCTGAGATACTGTGGACCACCCCCCGCCCCCGGGGGGTAGCCTATGACGTCTGAGTTCCAAGCAGTCTTTGCCCCACTGTGGGAGGTTGAGTTGGTTTAACTTCTCTGTGTTCAGTCTCCCTCATCTGTCTGCTGGGAACGACAGTGCCCATCAGGACCCAGAGAGAGCGCAGAGAACACTATGCACATTTGGTCAGAATTACATTACTGAGTTAAAGGCCAGCGTGGGGGAGCCCAGTGTCTACCGGAGGTCTGTTTCACCTTGCTGGAGGCCTGGTCTGTTTCACCTTGCTGGAGGCCTGCGGACTGACATTTCTGTGGGGTTTGCGGTAGGAAAAGATGAAGGCTGTTGACTCAAGCAGAGCATCCTATCCAGGGCCTACGCGCTGCACACCAGAGGGTTTGTTTATAAGCAAGAAGTGTGTCCATTAGATGAGAGAGCTCCTGTTCCTCTTTTCCCCTCTTCTTCCCCCTCCTATCATCTTCTTCCCTTACCCCCCTCTTCCTCCTTCTAAAGACGGGGATCTTTACCCAGGAACAGTTTTGCTTTAACATTAGAAGGCCCATTTTGTACTCTCTTTTAGCACCTCTGGCTTTTCACCTGTCCATTCATCTCAAGTCTGGTGGCTGCCCTTTCCTGCCTGCCCGTGAATGAATTCCCTAGTCGTCTTGCTCTGGACCAAGGAGCTTGAGTCCGGCCATGCGGTTTTGGATGTTTGGTTGGATGTTTTAAGTCCCTCGGCCAGCCATTACCCGGCAGCTCACCAGTCCATTTCCCCAGGTTTCCTGTGTTTGCATCTTGGTCCCTCAATTGTACCAAGGAGATAAGCCATGCACGTATAATATTTAGACTTCTGATTGCTGAGAAAGAAAATCAGCAGGGTGAGGGCAGGAAGCCAGATCAGAGGATTAGATTCCAGCCCAGGACATTTTGCTTTCAGATAGTTGCGGTGCTTTCTCATTGACCCTGCTTTTCCCTGGGCCTTGTCGGAGAGACTGGAAGTCCAGTTCCACACTCAGATAAGACTGTTCTTGAGAGAATGGGGATGGCTGAGAGAGGAATCCCACCCATTCCACGGCTGCCAGGTCAAGGCATTTGACATAAACGACCGCATTGCTCTGTTTGTTCAACCGCGGTGACTTTAGAAAAATATCCATTTCGAAAGGCCTTCCTGTGACTTCGCTGGATTCCAGGACATTCACAATGGCTCGGGGTGACCCTTGGCCCCGTCCGTCGTGCAGCTGCTCAGCTTTCTACCAGGATTTAGTCCGCTCTTGCCCTTTTTCAGGACACGGTGTGGGAGGAGATGTGAGTGTGAGCTGGGGCCTTCCTAGTTCCTTCAAGTTCCTCAGGATGGTTTTATTCACTGGTCATCCTAGCATCCTGGAAGGGGAGCCGTTGTCCTGGGGACCAGACAGATACTTGTTAATCCCCTGGGGCTACTTGCCCTTACCCAACCTTCAAATGCTCCAAGGTAGAACCACAGCTCGATTCAAAGTTATACATTGAGCCTGGCCCAGCACTGCCTGTTACTGAGAATTTCAATAAGGTGGCAGACAGTAGGGGTTCCCTCCTTCCTGTCCTTGTCATTTTGGCAGCAGGAATGACCCTGTGGTATTTCAGGACTTCCAGGCTATGTTAGGACCCAGCATCACACAATTCCCACAGAGTGACAGTGGAGACGAGCAAAGGTGGCACAGACACTCAGCCAGAGACTGGCAAGAGAACATGATGCCTGTTTAAACCACAGTAGGTCCGTTGCGGTCTTCGAGGATGGAGTTTCCCCAAGCTGGGTAGAGACATTGGCAGAGCCTCTTCTGCATGGATATCCTCTAAGGCATAAAGTCACAACTGTGTAGGAGGGGGAGCATAGAGAGTCGCCATCTGCAGATGTATCTACCAGCTTGGGCTGGGAGCTGGCCTTGTGAAGGTCAATGCTGCCCGGCCATGCCACGTGTTGATAGCCTCCTGCCTGTGCCATGCTCCCCCTGAACTTGCCCCTGGCCCTGAACAGGTTTCCTGTTGGCTGAGCTAGGGGCAGGAATGGAGTCTTGGATTGGCACTGGGCCGGTCTCTATTGTTCTCATCTTCTGTTCTTCATGGCTCTCCTGGGGTGAGGCTGTCCCCAGGCCCCTCTGCATGCCAGTTCAATGAGAGCTGTGCTTCTAGGCAGCCTCCCTGTCCTGGTGAGCTTCCAGGCCGCCATGTGCAGCTGTCCTGGCCTTGAGCAGGGAAGTCTGGGGCCTGTGGAGGAGGCTTCAAGCGAGCAGTCAGGGGCAGAAGCTCAGCTCTGAGAGCTGCGGGTTCAAGTCCCAACTCTAGCACAGACTGAATTCAGGTCTCTAGTCATCTCCCTTAGCTGCCCTGTTTATAAAACGGGATGTTGACCTGTAACCAGCTTGAGAGTGGGAACTACCTGACCTTGAATCCTTTGACCATACTTAGCCTTGATTGTCATGGGGAAAAGGGTACCTGGGGCCTTTGGGTACCTCACCTTGCCAAGGTATAGCTTCTCCCCTCACCTCTTCTGGGTTCTTCCAG
Seq C2 exon
GGGAGTGTCTTGTCACAGGCCAATCGCACTTCAAGAGCTTCGACAACAGGTACTTCACCTTCAGTGGGATCTGCCAATATCTGCTGGCCCGGGACTGCGAGGATCACACTTTCTCCATTGTCATAGAGACCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-Vwf:NM_011708:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(30.8=100),PF053758=Pacifastin_I=FE(50.0=100)
A:
NA
C2:
PF0009313=VWC=PD(28.8=32.6),PF053758=Pacifastin_I=PD(9.4=6.5),PF0009420=VWD=PU(27.9=93.5)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: