GgaINT0111215 @ galGal4
Intron Retention
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74452777-74454771:-
Coord C1 exon
chr1:74454725-74454771
Coord A exon
chr1:74452914-74454724
Coord C2 exon
chr1:74452777-74452913
Length
1811 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGCTCTATGCATTTTTCTAGGGG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CATTTGTCGGCATGGCATCTGGATCTGCAGTAATGGGGAATGCCCAG
Seq A exon
GTATGTTGGTCCTACAGTTTTTAGGTTTTGGCAAGTGAGTAAATGTTATCCACATCCTTTCCACTTACATCCCGCTTATATTTTTTCCACATGAAGGGTGACTTTGTCTTTGCTCTTTCTTGCTTGTTCCAATGCAATCCAGGTGGGATTGTACTTCAGTTCTCCTTGTGAAACTAAGCAGATGTTGTACTGTATGTGTAGAACTGAATATCCCTTTTTGGTGGGAAAAAATGGCTCTTTTCCTTTTTTTTTTTTTTTTTTAAGGATCTGTATCATCAGAGCAACACTGCTATTCCTGTCAGCAGATAGCCAGTATAGGCCCAGCACCTTGTTTGCAGTAGGAATATCTCTGCGTAATACTCATACAAAATAATTAGTTTGTAAGCTTTTTCCTATGTGTTTGCAGAGACTGTGGCATATCAGGGAACTACATCGCAGTAGTGGTGTCTAAATACTGTTGTCTTGGAAATGAAGAGCCACAGCTTAAAGAAATCTGTTAAGATGCTGAAATGTTTAGGTTGCTTCTTTTACTAATAGGAGTGTGGGAACATCCAATTTCTATATTATCCAGTAAGTATTTTAGTTGTAGATATTGTAAATATGGATTTCTTTTTAGCTTTCTACTAGTTAATAAAGATAATGGTTCAGAATAAAGATTTGCATAAATTCTGCCCTTGGAAGACCTCCAACTGCAATTGTCTTCCAGTTCTTTGTTCTGATAAGATGTTTTTTATATTAATATAAGAATAATGTTATGCTAGAATAACTTTTTGGTTTTTAAGGCAGGCCAGCAAAGGAATCAACACTTTTTTGGGGCCATGTTAAAGGAAGACATTTTGAAGAAGACACTATTACATTCATAAAAATATACTGATACTGCAATGCTCTAAAAACATCAGCAGAGTGACAAAGACAAGGGTCTCAGTTTGTAAGGACACAACTGTGTAAAGAGTACTGAGAATGAGGCACCTCTGTGAAGAGCAGAGCTGCAGCAAAGTGTTGTGGGAAATTTACATCCTTAACTCCATGAAAGCTCCTGTGCTCTGCTGGCCCAGTCTTTAGGTGCAGATGTGTTACACTGGACTAAGTAAAAATGTTTTCCAAGTGTTCTGATTTGAGATATTGCAAGCCCCCTGAATCAGTTTAAGGGGCCATGTGGTCCAGTGCACAGCACACTAGTGATGCTGGAGAATCCCAGCTTCCACAGTGCGGTGTAGCCACCTTAGGCATTAGCACTGTCACTCTGTGTCTGTTTGTGATCTCATAGAGAAGGAGGTTTGGTTGCTACATAAAAGTGAATGCCATCAGCACCATGTTGGGTTCAAGCTAAAATACTTTAAGAGAAATTTCAATTAGATTAAAACCTTTAGTTCAGTAAACTAGTTTCCTTAAACTAGTGTAATTTGTATATGACCTAGCTGGTAGAAACCTTGAGAAACTGCTGATTTCCCAGGGCTACACTGACGTGCTACAGAAGAATCAAATTCATTTCACAACAGGGAGCTAAGCTGTCCTCTGATATCATTATAAGCTACCCTTTGAAGCATTATACAGGATTTTCCATGGACAGGATTTCAGTTCCTGAGTGTGGCTGATGCCATATTTCCCTGCTTTTTTTGGTGCCATTGTTGCTACTAGTAATGACTTACAGGAATAAACAGTGAGATAAGCATCTTGTCCATTCTCTCTGGCCTTCAGGGATGTGGGCTCTGTGCAGCCATCCAGCTGCTGTTCCCCTTCTGTGACATAGTGGGCAGGATTTGGCTTACAGCCAGCACTAGGGTCTTTAACTGCTCTATGCATTTTTCTAG
Seq C2 exon
GGGAGTGCTCCATCACTGGCCAGTCTCATTTCAAAAGCTTTGACAACAAGCACTTCACCTTCAGTGGGATTTGCCAGTACTTATTTGCCAAAGACTGTGTGGAAAACTCATTTTCTGTTATCATCGAGACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272:ENSGALT00000037259:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=FE(48.5=100)
A:
NA
C2:
PF053758=Pacifastin_I=PD(12.1=8.7),PF0009420=VWD=PU(27.9=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGTCGGCATGGCATCTG
R:
TGGACAGTCTCGATGATAACAGA
Band lengths:
183-1994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]