BtaINT0163643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017365 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr22:15434175-15435724:+
Coord C1 exon
chr22:15434175-15434322
Coord A exon
chr22:15434323-15435608
Coord C2 exon
chr22:15435609-15435724
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CCATGGTGCCTGCCCCGTAGCCC
3' ss Score
6.27
Exon sequences
Seq C1 exon
TGTGTGACATGTGGCAAAGCTTTTAAGAAGCTCTGGTCCCTCCACGAGCACAATAAAATTGTGCACGGCTACGCAGAAAAGAAGTTCTCCTGTGAAATTTGTGAGAAGAAGTTCTACACCATGGCTCACGTGCGCAAGCATATGGTTG
Seq A exon
GTAAGTCTAGGCCTGTGGCGGAACGGGCCCAAGGTCCAAGCTGGGCCAGCTGCTGGGTGTGCTAGGAAGTCTTTCACATCCAGGGACAATATAAAGGGATGAGAAAGCACCAAGTAGCTGGGAGGTGGGGCAGGGACAGTGGATGGGGCAGTGGGGCCGAGGAGGGGGTAGGGCTAGTCTGGGGCCAGGGCTGCCATGTACGGTTGGGCACGTTGCACATGGCACAAGGGCTCATGACAGGAGGGCAGGTGGAGACCAGAATCCAGCTAGCACACTGCTACCCAGGCTGGCAGCCCAACATGGGGCTAGGTCCACAAGAGCACCTTCTGCTAAATTACACAGAGTGCTTACTGTGTGGGCTGACACAGCCCCTGTCTCAGTCTGAGGACAGCTATGCCCCTGACAGGGCTTCAGACTTCTCTGAATGCAACCCTCCTCCCAGGAGTCATACCTGGACACAAGTGTGTCTTGGGCCACTTCGCTGCCTTGGGCATGGCTGTCCCTCCCCTCTAGGTGGGCCTGGCTGAGAGTCTGGCTGTTGTCTGGGTGGCCCTCCTTTCTTTGCCCACTTGGGGGCTGGAGCTCTCCCCACTGTCTAGCCAGGGAGACAGTGAGCCCTGGCCAGAGATGCCCTTTCTCTACCAGACAGTACTGGAGGCTTCCGATATGAACTGACTGGGAGCTGGGAACCTGGGGTGTAGGTATCAGCCAGGAGCATGCTAGGTAACCCAGGATTGGTGGTCCTTCCTGGGCTTGGATTCCCCAGCTCTGAACTGTGAGGGGGGCCCTCCGTGTCTCCAGATGCTTCCTCCCACATCTTCCTTGGAGTTTGTTTTGGCAGGGAGTGCAGATAACTCCTTCTGGATGGCAGGGGACCCAAGGCTGAGGCCTTTACAGGTGCCATCCTCTGTAAAGCCCAGCCACCTTGGAGACCCAGGACCACTCTTCCTGTTTTTATAGAAGAGGATGCTGAAACTCACTGAGGCTCACAGCAGCCATACAGAGAACCAGTGGCTAGGCCAGGATTTGAGCCGAGGCTAAGGAACCATGAAGGCCTCTGTGCTTGTCTGAGCAGACAGAGACCTAGCGGGGGGTGTGGGAGGGAGGGACAGGGAGGGAGGGGGAAGGACCTCGCCTGGGGGACAGAGGCCACGGGGCAGGTCCCAGGGTAGATGGTGCCCCAGGAGGTGGGTTCAAGGCTCAGCGTGGGGTCGGTCCAGCAGGGGTCCCCTGGGAGAAGCCAGATGGGTCCCTGAGATGTCATGGCCATGGTGCCTGCCCCGTAG
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGTGGGAAGTCCTTCAAACGCAGCATGTCTCTCAAGGTGCACTCCCTGCAGCACTCCGGGGAGAAGCCGTTCAGATGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017365:ENSBTAT00000023089:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(3.5=14.0),PF134651=zf-H2C2_2=PU(26.9=14.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACATGTGGCAAAGCT
R:
CTCGCATCTGAACGGCTTCTC
Band lengths:
264-1550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]