GgaINT0093591 @ galGal3
Intron Retention
Gene
ENSGALG00000005287 | ZBTB47
Description
NA
Coordinates
chr2:1897185-1898122:+
Coord C1 exon
chr2:1897185-1897332
Coord A exon
chr2:1897333-1898006
Coord C2 exon
chr2:1898007-1898122
Length
674 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
ACTGCTCACCTCTGCCGCAGCTC
3' ss Score
7.88
Exon sequences
Seq C1 exon
TGTGTGACGTGTGGGAAGGGCTTCAAGAAGCTCTGGTCGCTCCATGAGCACAACAAGATTGTCCATGGCTACGCTGAGAAGAAGTTCTCCTGCGAGATCTGCGAGAAGAAGTTCTACACCATGGCCCACGTGCGCAAACACATGGTTG
Seq A exon
GTGAGTGCGGGAGGCGCCGGGTCTCTTTAGGAGGGATCTCATTAGGGGTGCTGGTGTGGGGTTTTTGATGATGAAAGGCATTTTTCTATTGCTGCTATGTTGGGAACTTAGGGCTGGGCTAGCTCTTGGTGAGCTTTTTAATGGCAAAGCGAAAGCATAGAGATTTGGCTTTTATCATCCTGCCGTGCTGGGTGGTGAATGCTGAGCATACGTCTGCTCTGTATTGATGCTTCTGGAGCAGTTCTCTGCTGCAGAGCAGGTGTGGCACCAGGAAATCTCATTTATTTTATTTAACCAGGAAAAAAAAAAAAAAGACATCAGAAGTGATCAAAGGAAGGTTTGAAGTGTAACCATCCTTCCCTTGTAAAAAGAGGATGAGCCTGTGCCGGCACTGCGCTTTGAAAAGCAAATCACAGATGGCAGCAGTGGCTGCATCTCTGTGCTCGCAGGCACTAAAAAAGAGCAAAAAAGGGTTGTTTTTTTGGCAGACAGCATCTTGTATAAAGGAGGGAGGGTCAGTGTTGAGCCCCGAGGCACGCTCATTGGTGGCATGGTGCTACCACACGTCTTCTTGGGATGATGTCTTTGAGTTGGCCAAAGTTGGGCGTCAGTTTTGGGACCACCGGAGGCCAATGCGTGGGGAGGGTGTGTGACACTGCTCACCTCTGCCGCAG
Seq C2 exon
CTCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGGAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTCCATTCTCTGCAGCACTCCGGGGAGAAGCCTTTCAAGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005287:ENSGALT00000008478:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF141531=Spore_coat_CotO=FE(18.8=100),PF134651=zf-H2C2_2=PU(26.9=14.0)
A:
NA
C2:
PF141531=Spore_coat_CotO=FE(14.6=100),PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACGTGTGGGAAGGG
R:
CACACTTGAAAGGCTTCTCCCC
Band lengths:
262-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]