HsaINT0184664 @ hg19
Intron Retention
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:26955]
Coordinates
chr3:42702977-42704619:+
Coord C1 exon
chr3:42702977-42703124
Coord A exon
chr3:42703125-42704503
Coord C2 exon
chr3:42704504-42704619
Length
1379 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CCCTGGTGCCCACCTCGTAGCCC
3' ss Score
4.88
Exon sequences
Seq C1 exon
TGTGTGACATGTGGCAAAGCTTTCAAGAAGCTTTGGTCCCTCCATGAGCATAACAAGATTGTGCACGGCTACGCAGAGAAGAAGTTCTCATGCGAGATCTGTGAGAAGAAGTTCTACACCATGGCCCACGTGCGTAAGCACATGGTTG
Seq A exon
GTAAGTCTGGGCCACTGGGGGATGGAGCCAGAGGATAGAGATGGACCAGCTTCTGGCTGGTGGATGGGAAAGACTTCACATCCAAGGGCAATGTGAAGGGGTGAGGAGGCCCCTCTCAGCTAGGAGGCCTGGGGAGGTTGGTTCCAGTGGCAGGTGTAGCCTGGACAGGCTCTGGGGCCAGGGCTGGCATGTACAGTTGGGCAGGCTGCACATTGCACAAGGGTGCCTGGACAAGATGGCAGGTGGGAACCGGAATCAAGCTGGCACACTGCTAACCAGGCTGTGCATCCTGGCACGGGCTCGTGTCCACCCAGGGAAAAGAATACCTTTTCCTAATTATACAAAGTGCTGTATGGGCTGGTACAGGCCCTGTGTCAGTTTGATGACAGCTGTGCCTCTGATTCTTTCTTACCTTCTGGTCCTCATAGGGCTTCAGGCCTCTCTGAATGCAGCCTCCCCTCAGGGTTCATGCCTGGACACAGTAAGGAGGTCCCCCAATTGTGTGTTTTGGCCACGCCACTGCCCCAGGCAAGGCTGCCCACCTGCTGTATGTGGGCCTGGCAGAGCCTCATGTCCCTACAGCCCTGCCTTCCTTGCCCGCTCCAAGTCTGGGCCTTGAGGGGGAGGGGTAGCCAAGGCAGACAGTGAGCCCCTGGCCAGGTCCTAATCCCTTTCTCCATGAGACAGTGCTGGGGGCCCTCCAGCATGAACTGACTGGAAGCTGGGACCCTGCGGCCTAGGTCTCAGCCAGGAGCATGCTGGGTAAACCAGGACTGGTGTCTGTGAGCTTGAAGGTGAGCCTTCTGTCTCCAGTGGCCACCTACCAGATCCTTGAAGAGTTTGTTAGTCCTCACCCATCCGTGGGTGCTGGGAGGAGTGCAGCTAACTTCCTCCAGACTGCTGGCTAGGGCCTGAGACCAGGGCCTTTCTGCATATGTCCCCTCTAAAGCCCACCACCCCTGAAGCTCAGGACCACTATGAGTCCCTTTTTATAGGAGAGGAAGCGGAGGTCCAGAGAGACTGAGTGGGAAGCCAGTGGTCGGGCCGGGATTTGAGCTGAAGCCAGGTCCACCCAGGGTCCTTCCATCCTTCCCTGAAGCTTTGGGGGCAAGGCAGCCTTGGCCACTTCCCTTGACCAGAGGCTAAAGAACCACAGAGCCCCAGCATGTCTGAGGCAGACCTTCAGAGCAGATAGGAGACCCAGCCATGGAGGCAGGGGGCCTCTCCTGGGAATCAGCACAGGTCCTGGGACAGAGTATAAGGCCAGCCCCAGAGAAGGGTGGTGGCACAGGGCTGCCCCAGGAGGCAGGGTCTGGGCCCAACGTCGGGGTGCTTGGGCAGGCCCGTAAAACATGATGGCCCTGGTGCCCACCTCGTAG
Seq C2 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853-ZBTB47:NM_145166:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(87.5=42.0),PF134651=zf-H2C2_2=PU(26.9=14.0),PF0013017=C1_1=PU(6.0=6.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF0013017=C1_1=FE(76.0=100),PF134651=zf-H2C2_2=PU(65.4=43.6),PF054957=zf-CHY=PU(12.5=23.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACATGTGGCAAAGCT
R:
CACATCTGAACGGCTTCTCCC
Band lengths:
262-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)