BtaINT0163650 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47662565-47662995:-
Coord C1 exon
chr16:47662909-47662995
Coord A exon
chr16:47662720-47662908
Coord C2 exon
chr16:47662565-47662719
Length
189 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TGCCTGCCTCTGTCCCCTAGTGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
TGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACCTGCAGAGCCACATGATCAAGCTGCACGGAGCCCCCAAGCCCCATGCG
Seq A exon
GTAAGTGCCAGGCCACGCCAAGGGTGGGGGCTGGGCCCGCTGCGATGCCGGGAGCCAGCCCAGGGAGGCGGTGTGGCTGGTCTAGAGCGGGCAGGCTGTGCTGTTTCCCAGGGCAGGGACTCCAGGGCGGCCCTGCTCCTCACTCTGGCCCTGCCTCTCACTCTGGCCCTGCCTGCCTCTGTCCCCTAG
Seq C2 exon
TGTCCCACCTGTGCCAAGTGCTTCCTGTCCCGGACGGAGCTGCAGCTGCACGAGGCATTCAAGCACCGTGGGGAGAAGCTGTTTGTGTGCGAGGAGTGCGGGCACCGGGCATCGAGCCGGAATGGCTTGCAGATGCACATCAAGGCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTCCTGCTCCCAG
R:
CTGTGCTTGGCCTTGATGTGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development