GgaINT0134599 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:553670-554387:-
Coord C1 exon
chr21:554301-554387
Coord A exon
chr21:553825-554300
Coord C2 exon
chr21:553670-553824
Length
476 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
GCTCTCCTATGGACTTGCAGTGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
TGCTCCTCCTGCGTGCAGCAGTTCATGCAGAAGAAGGACCTGCAGAACCACATGATAAAGTTGCATGGCGCACCAAAGCCCCATGCG
Seq A exon
GTAAGGGGAGCATGCTGGCACAAGGTGGGGTGAGTGGAGGTGGTATTTTTTAATGCTTTCTCTGCGGTACTGTAGAGATTTTGAGAGAGAATTATCCTGCACCGAGCTACAGAGTAATTCCCATTATCTTTTCTCGTTCTGCTAAGCAAGGCAGGGGAAAAAAGCAAGGCATGGAGCTGAAAAGCTCCTGGAAATGATTTTTGTTTTGGGTAAATGAGCAGCCCTCGTGGCTCTTTTTGACTGATAGATCCATACATACTGACCAGCTTTCCAGTTCTGGCTGGCTGTGCCATCCCATTCAGCATTTTGAAGCTTGGGGTTGCTGCAGGCAGGCCCCAACACATCGGCAGTGTGCAGCAGGGTGCATCATGTATGGCGAGGTTGGTGCTGCGAGGGGAGCAGATCTGTTCTGGGTGCACACTGTGAGCTGTGTGTGGGTGAGCTGCCTAACCCCGAGCTCTCCTATGGACTTGCAG
Seq C2 exon
TGCTCAAGTTGCTCCAAGTGCTTTCTGTCTCGGACAGAGCTGCGCCTGCACGAGGCATTCAAACACCGGGGAGAGAAACTGTTTGTCTGCGAGGAGTGTGGACACAGAGCCTCAAGTCGCAACGGCTTGCAGATGCACATCAAGGCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(59.3=55.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTCCTGCGTGCAG
R:
GCTTGGCCTTGATGTGCATCT
Band lengths:
238-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]