MmuINT0177737 @ mm9
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151395398-151395737:-
Coord C1 exon
chr4:151395651-151395737
Coord A exon
chr4:151395553-151395650
Coord C2 exon
chr4:151395398-151395552
Length
98 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCTGTCTCACCCACCTGCAGTGC
3' ss Score
8.92
Exon sequences
Seq C1 exon
TGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAAGACTTGCAGAGCCACATGATCAAGCTGCACGGAGCCCCTAAACCCCACGCA
Seq A exon
GTAAGTGCCAGTCAGGGCTGGGGTTCCGGTGGCTCTGGGACAGCTCAATCCTGTCCTCACCTGGATGTGCTCCCTCTGCCTGTCTCACCCACCTGCAG
Seq C2 exon
TGCCCCACTTGTGCCAAGTGCTTCCTGTCTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAGGAATGCGGGCACCGGGCCTCGAGCCGCAACGGACTGCAGATGCACATCAAGGCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-Zbtb48:NM_133879:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGGAGCCCCTAAAC
R:
GCTTGGCCTTGATGTGCATCT
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: