BtaINT0164238 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34063899-34067913:-
Coord C1 exon
chr13:34066103-34067913
Coord A exon
chr13:34064080-34066102
Coord C2 exon
chr13:34063899-34064079
Length
2023 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTCTACTTCCTTTTCTCTAGGAT
3' ss Score
11.05
Exon sequences
Seq C1 exon
GAGAGAAGCCATATGAATGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGTTCCTACAGCTCACACATAAGCAGTAAGAAATGTATCAGCCTGATGCCTGTGAACGGGCGACCAAGAACAGGGCTCAAGACCTCGCAGTGCTCCTCACCCTCGCTCTCGGCCTCTCCAGGCAGCCCCACGCGACCACAGATGCGGCAGAAGATAGAGAACAAGCCCCTGCAGGAGCAGCTCCCCGTAAACCAGATTAAAACTGAACCTGTGGATTATGAGTTCAAACCCATAGTGGTTGCTTCAGGAATCAACTGTTCAGCCCCTCTACAGAACGGGGTTTTCAGTGGTGGTGGCCCCTTACAGGCAACCAGTTCTCCTCAGGGTGTGGTGCAGGCCGTCGTTCTGCCAACGGTGGGTTTGGTGTCCCCCATCAGTATCAATTTAAGTGATATTCAGAATGTACTTAAAGTGGCGGTAGATGGTAACGTCATCAGGCAAGTTTTGGAGAATAATCAAGCCAATCTTGCATCCAAAGAACAAGAAACAATCAATGCTTCATCCATCCAGCAAGGCGGCCATTCTGTTATTTCAGCCATCAGTCTTCCTCTGGTTGATCAAGATGGAACCACCAAAATCATCATTAACTACAGTCTTGAACAACCTAGCCAACTTCAAGTTGTTCCTCAGAATTTAAAAAAAGAAACCCCAGTCCCCACCACCAATTGCAAAAGCGAAAAGTTACCAGAAGATCTTACTGTCAAGTCTGAGAAGGACAAAAGCTTTGAAGGGGGAGGGAACGACAGCACGTGCCTCCTGTGTGACGACTGTCCCGGGGACCTCAATGCACTTCCGGAGCTAAAGCACTATGACCTGAAGCAGCCCGCCCAGCCCCCTCCGCCCCCTACCCCAGAAGCTGCCAAGCCGGAGGCCGCCGCTTCATCGGGGTCCGGAGATGGCAGTTTGTCTCCCAGTCAGCCACCTTTAAAGAACCTCTTGTCTCTTCTGAAAGCATATTATGCTTTGAACGCACAACCAAGTGCAGAAGAGCTCTCAAAAATTGCCGATTCCGTGAACCTACCACTGGATGTAGTGAAAAAGTGGTTTGAAAAGATGCAAGCGGGACAGATCTCAGTGCAGTCTTCTGAACCATCTTCCCCGGAACCAGGCAAAGCCAACACCCCTGCCAAGAGCAACGATCAGCCTCAGGCTGCAGATGCAGATGAAGCCCAGGACAGCACAGGGAACCGCCAGAGCCCTCTGAAGAGAGCTAGCTCTCCCGTCTTACCAGGGGGCTCGGCCGTCAATGGTTCCAGAAGCAGCGCCTCCTCCCCTTCCCCCTTGAACCTCTCTTCCTCCAGAAGCGCACAGGGTTACTCATACCCAACAGAAGGGGCGCAGGAAGAGCCGCAGGTCGAACCTCTTGATCTTTCACTACCAAAGCAGCAGGGCGAGTTATTGGAAAGGCCAACTATCACTAGTGTTTACCAGAACAGTGTTTATTCTGTCCAGGAAGAACCCTTGAACTTGTCTTGTGCAAAAAAGGAGCCACAAAAGGACAGTTGTGTTACAGACTCAGAACCAGTTGTAAATGTAATCCCACCAAGTGCCAACCCCATAAATATTGCTATACCTACCGTCACTGCCCAGTTACCCACGATCGTGGCCATCGCTGACCAGAACAGTGTTCCGTGCTTGCGAGCACTGGCTGCCAACAAGCAGACCATCCTGATCCCCCAGGTTGCCTACACATACTCGACTGCAGTCAGCCCGGCGGTCCAGGAAACACCCTTGAAGGTGATCCAGCCCAGTGGAAATCAG
Seq A exon
GTAAAAAAGGAAAAAAACCACTCCCAGCCCCAATCCATTGATCAAATGCTAGTTTGATTTATTTTAGTGAATTTCTCTAATAAAAACCAGGCATGAGAGAGCCAAGCAGCTTGTTAAACTGTCACATTTGAAAGGAAATAGCTGACTATGTGCCTTAGCTGCTGTGGCATCTTGGCTTTTGTTGTTTACTGATTCCAGAGTGTAGTTTTCAGCTGCAGTTTTAAGTATTATTTTGCTGAAAAGAGGGTCAATGGGTCTCAGCTATAAGACTGACTGTTTGTAACTAGAGATGGAAGAGGAAAGTAAAATTCAAATACTCATTAATCAGACTTCTGTTTTATAGTTAAGTTCCCAGAATTCGTCATAGTTTCTGCCTTATGATCATCAGTAAATGAAAATTTGTTCACAGATGTTTTACACCAGGCAAACTTAGCTCTCACTTTTTGTGTTAACCTGTTTATAAAAGGCTTTAATGAAGCAAACAAAAATTAAGTATATAAAGAATTCACCTAATGAGTTTACTGATGATTTATGTAAACTAGTGTTCAATCATAATAATACATAAGGAATTACAGCTGTGAATCTGTGTTTGTATTTTCCTCTGTAACACTCTCCAAGTCCATGACAGTTATGATAAAGCTATTTTGCATGACTGTTGTGTGTTTCACTGTCCAGGCTTTTTCTGTGTCACTGACCTTGATGTCTCCATTTTTTCCATCAATTTCTGATTGAATCAAATGAATACTAGAGATAAATTTAATCTTTTTCTCAAATACTTACTATAAGAAGATGTGACTGTAAAATAATTACAATATCCTGTTCAAGTATGTTTTGCTATTTTTGTCTCCTTAAATATTGCTACCAATGGGGCTTCCTGTAATCGTGGTAACCTTGAAAAAGTTTTCACATGGCTAACTTTTTCATGAAACCTAAATTTTAACTGTATAAAACACTCTTCACACCTTTGAAGAATAAACTGGGAAATTTCAGTTAACGACACCCAATAACATGAAGAGAGTCCCTTTAACACCATTGGCAGCTTACAAGTGGCAGAAGAACGTCTGTCAGCACTTCGCCCCCCTTGTTGTTTAGTTGCTCAGCTCAGTTGTATCTGACTCTTGGCAACCCCATGGACTGTAGCCCGCCAGGCTTCCCTGTGCATGGTATTTCCCAGGCAAAAATACTGGAGTGGTTTGACATCTCCTCCAGAGAATCTTCCTGCATCAGATATTGAACCCACATCTCCTGATTGGCAGGCGGATTCTTTACCACTGAGCCACCAGGAAAGTCCTCTCCCACCTTACAAAGCTGTAAGAAATTGTGGGAAACCTCTAAACTTGTGGAAAATGTGTGAGTTTAGGATGGAAGTCTTCAGGAAAGACACAGGATCTTAGGAGCCCAATCCCACTGCAGGCTCCCTGCAGAATTCTTCCACCTACAGGAGACCCTGCCTCCAGTTTTCTCCCTAACCCTCACCCAAAACTCTGAAGATTCACCATCAAGCAAGGATTCTTGTTTAAAAACACAGAACTGCCTGCATTGTTTTTCCAACTTGCCTCTTAGGAAAGTGATAGGACAAACCTCCCTCTTTACAAGGAGACAATGAAGTTTAGTTCACAAAATTCTAAGGTCCTGGAAGATACAATTTAAAGACCACTTTTAAGAAATAGAGTCTTGATTTTCACTTAGTAAAACCCAGAAGGTAAGTAAGTGATGCAGTTAGAAATTCACAACTGTTTAGCCAACTGGTAAGTTAAAATGTTCGGCAGACTTTTCATAAATTAATGATCCAGAGGCAACTAAGCGTGTTCTCTGCAGCGTCCTTTCTTTCGGTGCCCGCCGACCCTGGGCTGCTTTTGCTGTTGTGACTGCACGGCCCCCTCACCCGAACCTTCCCTTAGAGCCTGCTTTGGTCAGGTTGTCGAAAGCAGAAATCAAAGTGGTTCCTTCAGCTCTGCTTTTATTTATGTCTGTCGTTTATCCTGTAATCTTAAACGAACTTTTTCTACTTCCTTTTCTCTAG
Seq C2 exon
GATGAAAGGCAAGACACTAGCTCAGAAGGAGTATCCAACGTAGAGGATCAGAACGACTCCGATTCCACGCCCCCCAAAAAGAAAATGCGGAAGACAGAAAACGGAATGTATGCTTGTGATTTGTGTGATAAGATATTCCAAAAGAGTAGCTCACTGTTGAGACATAAATACGAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053:ENSBTAT00000038847:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.5),PF0004624=Homeobox=WD(100=8.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development