RnoINT0167566 @ rn6
Intron Retention
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54660719-54663589:-
Coord C1 exon
chr17:54662957-54663589
Coord A exon
chr17:54660897-54662956
Coord C2 exon
chr17:54660719-54660896
Length
2060 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
AATCTTCTTTTTCCCCTTAGGAT
3' ss Score
11.69
Exon sequences
Seq C1 exon
AAAACTGAGGAGCAGCCTCAACCTGTGGATGGAAATGAGCCCCAGGAAGACAGCACACGTGGACAGAGTCCTCTCAAGATGACAAGCTCTCCAGTTTTACCAGTAGGATCAGCCATTAACGGTTCCAGAAGTTGCACATCATCCCCATCCCCTCTAAACCTTTCCTCAGCCAGGAACCCGCAGGGTTACTCTTGTGTGTCAGAGGGTACCCAGGAGGAGCCCCAAGTAGAACCTCTTGATCTCTCACTACCAAAGCAACAGGGAGAGTTACTGGAAAGGTCGACAGTCAGTAGCGTTTACCAGAACAGTGTTTATTCTGTCCAGGAAGAACCCTTGAACTTGTCTTGTGCAAAAAAGGAGCCACAAAAGGACAGTTGTGTTACAGACTCAGAACCAGTTGTAAATGTAGTCCCACCAAGTGCCAACCCCATAAACATTGCTATTCCTACAGTCACTGCCCAGTTACCCACAATCGTGGCCATCGCTGACCAGAACAGTGTTCCGTGCTTACGGGCACTCGCTGCCAACAAGCAGACTATTCTGATTCCCCAAGTGGCATATACATACTCCGCTACAGTCAGCCCAGCCATGCAGGAGCCACCAGTGAAGGTGATCCAGCCAAATGGAAACCAG
Seq A exon
GTTAGTGAAGCACCAAACTAACTTTCTAGTGAAGACACTCCATCTCTGTAGTCAGGCAGAGTCTTACAACTGCATGTTCAAAAAGAATTATCTCTTTGCTCTCCTCGTGCAGCAGAATATCTTCCCTTGCTGCTAATCAGGGTTAGAGGCATCAGCCAGAGTTGAAAGCCAATGCGTGTACTCAGCTGGAGACCAACTAGAACTTAAAAGCAGGGGAGAAAAGCTGTGATACTCGTTAACTAGATTTCTGGTTTTCTAGTTAAATTCTCAGATTGGTGAGTTTCTCCTTTGCTTGTGATCACTATTAAACAATCATGTTCTTATTTACCATGAAGCCAAGACAGGATCTGCTGGGCCTTGTGTGCCAACTCCTTTGTTGGGAGTTAGGGTAACCTTTAGTTAAACAGAGTATTCTGGAACTCGCGTGCAGTGTGGTTGTCGGTATTCATGAGGCATGGCTGTGGCCAGGAGTGCACTATCTGTTTCTTGCTGTCTCTTCAGAATCTTGCCATGTCACTAGGCTTAATGTCACCACTTTTTTATCAGTTTTCTTAATTGAATCAAATGCCAGAGATACCTGTTTGATCTTACTGCAGGCACAGCTGCAATTACTTCCATGTCCTGTGACCCTTCAATACTGCCTTTCATGGGTGTTCCCAGAATTGTAGTGACTCTTGAAGAAACCATGTCCATGACCAATGACAGTAGCTCTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATACTTGTGTATGTATAGGTGTGTCCACCCATGAGTGTGCATGTAGAGGCCAGAGATTGACTGTGACTATCTTCCTAATCACTCTCAGATTTTAGGGACAGGGTCTCTCCTTGAACTGGAGCCTACCATTTTGTCTAGACTGGTTGTCTAGTGAGTCCCCACTATCCACCATCTTCCCAGCCCTTCTTGATACATGTTTAAATTTAAAGAAAACAGAGCTTTTACCATTTCAAATGACTGACTATCAAAAAACTATAGAGTCACTTCTGCACTGGCAGCTATAGTGACAAGCAAATGAGTGGCTTTGCTTGTCATAGAGAGCTTTCAGAAGAACAGAGAGAGTTTAGAGGCAGAACTCTAGAAGAGATGCAAAGGTCATAGCTGACCTTAGTCTGCAAGAGGCTCTCTGCAGAATTATTCCATTGAGAAAAGGGCCTTCCCCTAAAGTGACCTCCCTGAGACTGTCTTCAGGTATTGTGGTGTGTCGTGTATATTCTATGACAATCATAAGGGTTCTGTTTTACACACAGCTCCCATTTAAAAGTCTCACTCCCTCTCACACTTTCCCTCCTCATTCAGGGAAAGTATGGGCCAAAGCAAAACCCTCTTCGCCAGACCAAGGGAGCTGGCACAAAGGCCTCCAGAATGGAGGACACAGTTTAAAGATATTTTCTAAACATTACATCTTAATTTTTACTTAGTGAAACTCAGAATTCTTGTTAAAACTATGGTAAATAATGAATTGGGAATCAAGCTCATTGATTAAACCTTTCTGCAAAACTACTGTAAAATCATAATTAGAACAAAGTAAATGTGGCAGCTGACCATCTGATTGGCCCCTCTTTTTGGTACAGTTGAGGGATGTTTTTGCTATACCCTGTTCTATGTTGTTCCCAGACTCATTGAGTCTCTCTGTGTCTATTTGTAGTGTGTGCTAGCACCCCGTGTGCAGTCACTGTAGTGTGCTAGTGCCCCTGGAGCTGTCTGCAGTCATTCTCCCATAGGCTTGCTGGGCTCTGGTGGATGTCTAACATGATTTCTTTCTCATGCATCTTCTGATCTTCCTACATTTCTTTATTTATTGGCAGTGGGGTGCCTCCCATGTCACCCCTCACACGTGGAGGTCAGAGACAATGTAGAGGTCAGCTCTCTCCTTTCTCCATGTAGATCCCAGGGATCCAACTCTGGTGATCTGTGTTTGTGGCTTTGTCTGCTGAGCCATCTCACTGACCCTATTGCTTGTGAACCTTTTTCTTAGACATTTAATCTTCTTTTTCCCCTTAG
Seq C2 exon
GATGAAAGACAAGACACTAGCTCAGAAGGAGTCTCCGTGGAGGACCAGAATGACTCTGACTGCACGCCACCCAAAAAGAAAACTCGGAAGGCAGAGAATGGGATGTACGCATGTGACCTGTGTGACAAGATATTTCAGAAGAGCAGCTCCCTGCTGAGACACAAATATGAGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863:ENSRNOT00000024336:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=NA C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]