BtaINT0164432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41306751-41310631:+
Coord C1 exon
chr20:41306751-41306998
Coord A exon
chr20:41306999-41310439
Coord C2 exon
chr20:41310440-41310631
Length
3441 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATTCTTTTTGTTTGAGACAGACT
3' ss Score
1.92
Exon sequences
Seq C1 exon
GTACATCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCCTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAGGCAGCGGCGGCGGCGGCGGCGGCTGCTGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCACTATTGTGATGTCTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTATGTATGTTGTATGCTTCACCGTAAATCTTCAGTGGTTGTCCTTGATAGTTAAGTATGATTGATTATTATAATTCTTATGCCTACAAAGAAAGTTTATGTTTTTCTTTCCTGCTAGCTTTTAGTTAACATGTACATATTTCATCAAATGGCCATTTTTTTTTAAAGGTTTTTGTATTGACATACAAGAATTTTAAGAAAAATACAGTAAAAATAATTATGAATGTTATTAAAAAGTGGAAAAATTGAGCTTTTCTTTAGGAAGGATATTTCTCTTTAAATAAAATTTTTAATTTAGCTTAAAAGTTTTATATTCAGATTAGTTGGGATTTGGGAGTAAGATTGTATTTTTATTTCTTTTTTGGCATTCATGACTTATTTTTTAAGCCTTTTATGCAAAATTCTTGAACTTAAGACAATTGGATATTGATTTTCTTAGTTCTTCAAGGTCCATATTGAGTGTATGAGTAGAATTTTGTAGTTGAAAAAGGATGACCATAGAGATAGTTAAGTTTTATACACTGACATGATGAGATGAGAAGAGAAGACTTTGTCAGATATAAAGATTTGAAGTTGCCTTTCTCTAGTATTAAAAATCCTTAAGCTATTTTAATAATCTATAATTTTAGGATAACATTTTTCATGAGACTGACTTTTGTATATGCTTTATAGAATGTTACTTGTTTCTATATACTTATTTCCTCCATGAGGCTGTACGGACTTTGGGAATAAGAAAGCTGTAGGAAAGTGTCTTTTTCAAAAATATCAGCTAAAGAAGCATGCAGAACCTTTATTCCTTTATTCTGTTTTTTGTTGTTGTTGTTTTTTGTTATTTTCTTGCTGTTGCTAAACATGAAATAAGTGATTTAGGGAAGAATCTGTTTATAAAGTCTAGTGAGTTCAACTCCCTTCCCAACTTTATTTGTTAATACTTTCTTTAAGAGTGTCTAGTGTTTATCTAAAAATTTGGTAAGCATTTTGGCACAAAAGGCATAGTATTTGAAAAGATCAGATTTTGAGTCTTCAGTGGTTTCTTCCAGTTACATCATATATCGCCCTTTCCCAACCTGTGTACATTCTTTTAAATTTACTAGATCAGTTCTGTCTGCTTTTCGGTATAGAATTTGGGAGTTATTTTCAATTGTCAGCATTCTCTGAATTATACCAAATTAGAGACTAGTTTAATATATGTGGCTGTTAAGATAAGACCTTTTTTTTCCCTATTTTAAGTTTGGTAGAAAACAGTTTCATTGTGATAACATGCTTGGGGGAGAGGAGACATGGGGAATGTTTGCAGCAACCCAGCACTAAACATGAAAGGGAACAAGAATATTGGCTTTAGTATTGAGGAGTGTATCCTACTCAGTAATGACTGTTTAGGGTGAATGATGATGTGGTGGCAATTACAAATGTTAAGAGACTTGACTATGTGGTAACATATAAAAGGATAGCACATAGCTTTAGGGTGATAAGTTAATGGCATTTAGAATCAGCATATATATGTAAGGCTGACCATTGATTTGGGGGAGCTGGATGGTTACACAAGAAAACAGGCCAAGAGTACCTCTGTTAAGTCAGAGGCAGTGCCATAAGGGGTTAATGAACCTATGGAGAAAAATACTGTATGAATGAGATGGTGAGTTAGAGACTAGTGTAGATATAAGAAAGGAGACTAAATTGGTTCCAGTATGAGAGGCCATTGTTTCAATCCTGTGTGGGGATTTTCTCCCTGGGACTTGGAAACGATGAACCTGAAAGAATGACACTTGGACAGTCTCTTGCAAGGACTGACAAGTTTATTTCTGCAGTTAAGCCTTTTTATAGAAGCAGGAACAGAGAGCTTAGAGTATACGGCCAGCAGAGCACGTATGGGGTTAAGACATAATCAGTAAACAATATTTCAAGGGCAGCCCATGTGACCCATGTGTTTAGCCCATAACCCGTTTTCTCAAGCAACATCTTTAATGTTTATTATTAAATCTTGGTGCTGAGCATAGCTAAAGGCAGGAGATGTTTTTCAGCCAGCAGCACGCAAAGCTGGGGTACTTCTGGCCCTCCGCCATTTTCCCAAGAACCTTCTCCTACATGGCTATTTTGCACTGCGCTTCCCAACAGTCCTGTGTCTGTGACTTAATTTGTGGTCTTGGGCAAGTTGGAGACTAAGTCAATTGTCTGGGCTTTTGTTTCCTCACTTCTGTAATAGGCACTTGTCCCTAAATAATTGAGGTTCACACTGCTTCACGAAGCCACTTTAGACTGCTGCAGATGGTGAGAAGAGAATCAGATGGCTAGGTCTTAGGTCTTCCTCTTTTGTTTGAAAAACAGTAACTTTCCTTACTCTCCTTACTTGTGCATAAGATTTCATTTTGAGAAAGGATTTTCTTGTTTCAAACTTAGAAAATAATTTTAGGTAACCTCTAGAGTCCCATTCAGCTCTGAGATTCTATGCTATCTATGCAATTCTATGCTCATCATATGTGTGTATAAATTTTTTTAAAATAGGAAATAATAAACTGGCCCCACTCAAGGTCCTTACTGACCTCCTTGCATTTTTATAAAACTGCCTTCCTCAGTCATTGACATTGAAGACAATTTTTAATATATACTTGCACTATTTTGGTGGCTAGTATTACAATATTATTATTTTTCCTTCAAAAGGGATACAATTCTGGCAGTTAATATACTTTTGTTCAGGGTGGAATGAATTCTAACACAAATTGTGAAAATGCATTCTTGAATTTTCTCAGATCCAACTGACTTCTAAGCCATTTTTATAAGTAAAATCATACCTGTTTATAAAGAGTCTTGTTACCATGTAGTAACATTGTTTTTTCTTCTCATGTGGCAGATACATTTTTCCTCCCTCCTCATAATCCTGTAATTAAATAATTTCTTTTGGAATGATCCCTCTTATTAGTCTCTACCAAACATTATACATAAGCACTAAAAGATTCAAATTCTTTCAAACTGAGAGCAGTTAACTTATATTGATATTTTGGCTACGTGTGAAAGTCCTTTGTTAATTAAAGTGTTAGGTAAGTGTGTTCTTGGTAAACAAGGTACGAGAGAGACTATTTGCTCAGCTGTGTCCAACTCTTGCGACCCCATGGACTGTAGCCCACCAGGCTCCTCCATCCATGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATAGAACCCAGGTCTCCTGCATTGCAGGCAGACGCTTTAACCTCTGAGCCACCAGGGTACAGAGAACCACAAATACATCCTGTATGTAGGGAAGCCACATGCTCCTGGTTCAGTTGCTTTTAAAATGGTGTAGTGCTGAGATTGTAATGAGTATTAGAGATTGGAATGAATCATTGCAAATAATGTAGATAGAAAAGTAGTGAAGCAAAATTATTCTTTTTGTTTGAGACAG
Seq C2 exon
ACTTATAAAGAACATTTAGAAGGGCAGAAACATAAAAAAAAAGAAGCCGCATTGAAAGCCTCACAGAATACCAGCAGCAGCAACAACTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414:ENSBTAT00000011072:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]