GgaINT0063928 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9123353-9124774:-
Coord C1 exon
chrZ:9124527-9124774
Coord A exon
chrZ:9123545-9124526
Coord C2 exon
chrZ:9123353-9123544
Length
982 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGTATTATTTGTTTAAACAGACT
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTACCTCTTATTCTGGCTATGAGGCTGCAGTGTATTCAGCTGCGTCGTCCTATTATCAGCAGCAGCAGCAGCAACAGAAACAGGCAGCGGCAGCTGCTGCTGCTGCTGCAGCGACAGCTGCTTGGACAGGGACCACCTTCACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTACTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTACCTGTATTATGTAATATTCTGCTATACATTTTTGTCACCGTTTCTCCAGCTAAGAAGACTCCTTCAAAAATATTTGTTAATGTTTAAGGACCTGTTAAGGACTCTGTAATTTTATTAATGGAATAAATAATCAAAATGTGTGCTGTTACAGAATTACAATGAGAAAACAGAAAGGTACCTTCTGTTAGCTTGTACAGAGGAGCTGCAGCTGTATTTCAGACTCAGAAGTATTCTGAACTTTGAATTTGATTTGCTTTTTTAGCATAACAAACTTCTTAGAAAATACTTTCATCAAAACTCCTGAATCATATAAATGTTGTGAATGGTAAACCTGAAAATTTATTCTTCATTGTATCCCATCATCCCAGTTTAGTTTCACAGAGGATACAAGTGTGTAAAAATTAGATAACAATTAATGCTGTGTTTGTGTGTGATAGGCTATGCAGTTATTTAAGTGAATCTGCCATTTTTTCCCAGGTTGCCAATGTCAGCACAGGAGCTAATCTCAACTTCTGCATTTCATTTTCAACACAGCTTTCTGTGCTATCTTTATTTGAATCCAGTTTTTTAGTTCTTAGAATACACTGTCTTCATACACATTGATCAAAAATTGAAAACCGAGAATTATTCTGTGCAATGCAGGAAACTGCAACTGAGATATACTTCTGTGGTTGTATCAAGTTTTCGATAGCAGTATCTTTTGAACAGTACTTCATTGAGGAATTGAGAAGGTGTTGGAGACTCAGACAGTATTACCTCTAAAAGTGGACATCTATTGAAAGGGAAGAAAATGTCCTAGTCTTACAAGTGGTCTACTTATGCCTTAGAGCTTGTCATATGAAAGAAATGCTCAGCATACCAACTGTTTCTTACATAAAGTGTGTATTTTATGCTCTGTTCTATACTATGTGTGTTCACGTGAATGATGGACAAACAATACAAAGGCAGCTTACTGTGTGTGTATTATTTGTTTAAACAG
Seq C2 exon
ACTTACAAAGAACACTTAGAAGGTCAGAAACACAAGAAGAAAGAAGCAGCGTTAAAAGCATCCCAGAACACCAATAATAGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGTGGAGCCAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCTATGAGGCTGCAGT
R:
TGAGTTCCACGAGCAGAAGTG
Band lengths:
342-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]