HsaINT0185604 @ hg38
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32403906-32407021:-
Coord C1 exon
chr5:32406774-32407021
Coord A exon
chr5:32404098-32406773
Coord C2 exon
chr5:32403906-32404097
Length
2676 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTCCTTTTTATTTGAAACAGACT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTACGTCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCTTCCTACTATCAACAGCAGCAGCAGCAACAGAAGCAGGCAGCAGCAGCAGCTGCTGCTGCTGCTGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCACAGATTCACTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTACTTACGTTGTATGTTTTACCTTGAGTCTTCAGTGGTTATTAAGTGTAGTTGGTATTCTAACTCCTGAGCCTACTAAAAGAGGTTTACATTTTTTCCTGTTAGCTTTTAGCCAGTGCATTTTTTAAGTTACTTGTATTGTGGCATGAGAATTTTCAGGGAAAAAAAAACTGTAAAGATGATTGTGACTGTAAATGATAAATAGGCAAATTGAGCTTTTTTTTCCGGAAAGAGACTTTGTTCTTTAAAACTTAAATTTAGTTTTAAAATTTTGTAGTCAAATTAATTGCGACTTGGGTAAGATTGAATTTTTATTTCGTTGTGTTTTTAGCATCTGTAACTTACTTGCCAAAGCCTTTATTCAAAATTCTTTAACTTAATATAGCAGGTTACTGATAATCTATAATTTTCAGGATTGCATTTCTAATGAGACTGACTTTGATATATACTTTATAGTATGTTAGTTATTTCTGTAATCTCATAAGGGGAGTAGGAACTTCGGGAACAAGGAAGGTGTAAAGAAGTGTCTTTTTCAAAAATACCAATTAGTGAGGCATGTAAATGTAAAACCCTTATTCCTTTTTCGGTATTGTATTGTTTCTGGTTGCTAAACATTAAAACGGGTGATTATGACATGATTCTATTTATTAAAATTAATGGATTCAACTCCCAGCCTTATTATTATGCTTAAGAGTGTCAACTTTTTATATTAAAATTTGATAAACAGCTTGGCAGATAAAAGGCATGTTATTTGGAAACAACCAATTTTGACTCTCTACTAGCTTCTCCAAGTTATATCCATCTCTCATTTGCCCTACCTGTGTAACACGTTTACTTTACTGGATTAGTTTTCTCTACTTCTGAATTTTGGGGGGTATTTTCAGTTTCTAACATTCCCTGAGTTATACCAAATTACAGAACATTTTAATATATGTGGCTAGATATATAAAACCCTCTTTTCCCCTGTTTTGAGTATGGCAGGAAATAGTTTTGTTGTGGATTGCTTGGTTGGCAGGAGGTGACGGGAGGCAGGTGTGGCACAGGTAGGAAATGTTTGCAGGGACCTGGAGTAAACATGAAAGCGAACAAGAATGATGGGCGGTCTTAGTATTTAAGGAGCATTTCCTACTCTATGTTGACTGTTCAGAGGGGTTAGTGTCATGAGTGCCAGACTTGGACATAAGAAATTTATTGATTACCTGGCTTATATGAAAGTATACAGCGTGACGCTTGGGTGATAGATTAACAGCAGCATGTGGAATGAGTGCATATAAGGCTGGCTATTTTTGCTGTGCTGGGTGGTTAACAAAAAGAACAGGCCACAGGTATTTCTGCAAGTCAGTGTCAGTACCTTAAGGGGGTGGTTAATGAGCCTTAGCGAAAAATATCATTGAGATTGAGTTAGAGTTCTAGATGCGTACATAAGAAGGAAAAGAGTAAGTTGATTCAGCTTTTGGGGGCCAAGATTGCAGTCCTGGCTCTGCCACTAGCTATATAACCTTGGGCAATTTAGAGACCTTAACTTCTTTGGGCTTTTATTTCCTCACTTTTCTATAACAGGACTTGCCCTAAATAATTGAGGCTCAGACTGCTTGGTGGAGCTATTTCAGGCCACTGCAGATAATGAAAGGAAAGTCCCATCCAGCTCTGAATTGTATGATGAACATATAATTGTATGCTAATTATTTGTCAGTTTACAACTGTCTTTTAAGAGGCAGTTTTTAAAAAGAGAGTTTGAGACCAGCCTGGGCAACATGGCCAAATCCCATCTTTACCAAAAATATGAAAAATGAGCTACGCATGGTGGCAGGCACCTGTGGTCCCAGCTACTCAGGAGTCTAAGGTGGGAGGATCACATGAGCCTGGGAGGTGGAGATTGCGGTGACCCAAGATTGTGCCACCGCACTGAAGCCTGGGTAACAGAGTGAGACCCATCTCAAAAAAAGAGTAACAGAGGAACCATTTGGTCCTACTCACAAAACTGTCCAGTTGTTCTTACTAATATCCTCTCGTATTAATTAACAGCCTTCCTCAATCATGTGCATTCACAATGATTTTTAATATGTAATTTCACTATTTATTGGCTAATGTAACTATAATACTATTTTTGCTTGCAAGTATATACCATATTGGCCCTCATGTATTTTAAATAAGCATTCATTTAAGGGCCATGGATTCTAATACAGATTCTATGTCAAAATGTATTCTGAATTAGAAAAGTCAGTTTTATAAACATAGCTGTTTGTAAAGAATCTTGTTCCACCATACAGTAACTTTTTCTTTCTTCTAATGGTATAGGCACATCTCCCCCGCCTCATCTTAACCCTGTAACTAAATATAATTTCTTTATGGAATGATCACTGTCTATTATTCTCTGTCCAACATTTATATAAGCAACAAAAGATAAAATTTTTAAAACTGAAAGCCATTGCCTTATATTATGGCTATATATGAAAGTACTTTGTAACTCAGTGTTAGATAATATTCTTGATAAACAAGATACAGAGAACCATAGATATGTCACATATGTAACGAATGCCACATGCCCTTTTTCAACTTAAAAAGTTTGTTTTGGTCTCATTTTTAGATGAGTATTAGAGATTTCTTGAGAATTGAATAATCTTAATGTGTAAAGAAAATTAGTGAAGCAAAATGTTTCCTTTTTATTTGAAACAG
Seq C2 exon
ACTTATAAAGAACATTTAGAAGGACAGAAACATAAAAAAAAAGAAGCTGCATTGAAAGCCTCACAAAATACCAGCAGCAGCAACAGTTCTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGCGATGTGTCTTGTACAGGAGCAGATGCGTATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097:ENST00000265069:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains