RnoINT0168807 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62179007-62182408:+
Coord C1 exon
chr2:62179007-62179254
Coord A exon
chr2:62179255-62182216
Coord C2 exon
chr2:62182217-62182408
Length
2962 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GTACTTTTTGTTCAAAACAGACT
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTATTTATATTGTGTATTTACCATGAGTCTCAGTGGTTGTTTTTCATAATTGAGTAGAGTTGGTGTCTAACTCCTGTGCCTACAAAGCACATTCACATCTGTGTATTCTGTACTCTGCAACTCACCCATAGATCAAAAAGATGCATGTGGAAAACTACATCTGTGTAGAGTACCTACACTTTTTTTTCCTATTATTTTCTAAATATATAGTAAAACAGTTCAGTAGGATTTACAACAGGTACTATAAATAATCTATAGATCTTAATGTATGCAGGTGAAGTAGATTATATGCAAATAATTTTGCTATTTTATTTAAAGAACTTGAGTATGCTTGGATTTTGGTCAACAATTTCCTGCAGACACCGAGAGATGGCTGTATTTCACTAAACATTTCTCTAAAAGTTGTTTTTGTTGAAACACAGAAGCAATAATCAGGAAAACTGTAAAAATGGTTATAAATGTTTGAAAAATAAGGAAATCGAACCCTCTACCCTTTCTAGGGTGCCTCCTTTGCTTTTTATATAAAACTTTAAAAGATTTTTAAAATTCCAATTAACCTATAATTTTAATGATTGTGTTTCTAATGAGACTATTTTGCACATGTTTCATAGAATGTAACTTCTGTTATTTTCTCCACAAGGGGACTGGGAACATTGGAAATTAGAGAAGTGTAAGGAAGATGACCTGCAGTGCTGGGGGCGTGACTCAGTCAGTAAAGTGCTTGCCGCTGTATTGAGCCATAGACTCAGATCCCCACAGCTACAGTCAGACATGGTAGTTGCTGCATGCCTGTAATCCTAGTACTGAGAGGTAGAAACGTTCATTGTTGTCCTTGGCTATATAGTCAGTTTTAGGCCAGCTTTGGTAAGAGGCCCTATTTTCCTCTACTCACCTAAAAAAAGACCAACCTATGACAAATGTGAGTTCTTTATTGTCATTTTTATTGTCATGGTTCTACCAGATATACCTTAAAATGTGATTTTTAAGCATGGATCTATTAATGAATTCATCCCTTTACCTGTTTTGACTATGAGAGAGTCCTATTTTGTCAAGTATGGGGGTTGCACTTGTAATCCCAACAACTTGTACAGCAAAAGTAGGAAGGTTTCTTCGCAAGGTCACCCTAGTCTGCAAGCCTGTCTTCTTAAATGTTTTATATCAAAATTTGCATAAGCATTGGCTAGAGGGATGGCTCAGTGGTTAAGAGCACTTGATCTTGCAAAGGACCTGGATTGGGTTTCCAGCACTATGTGCTGACTCACTTAAATACTACAGTTCCAGGAGATATGATGCCTCTTGCCTCTGAGGGTAAAGGCATGAATATTTTTTGTTTTCAAAGATTTTAACAGCTAGGCATTCAAAAAAGCATATTTGGGGAGAGTAGATCAAATTTGACTCTTTCTATTCTACCAATATATGCCCCCTCCCCTTTTTTGAGAGAGAGACAGACACAGGGTCTTACTACACAGTGCTTGGCCCATCTTCCCTTCTCACTCCCAATTCACTTTGTAGACCATATTGGCCTCAAACTCACAGAGATCTACCTGCCTCTCCTCCCAGGTGCTGGGATCAAAGTTGTGTGCCATTATGCCTGGCTTATATATACTTTTTAACTTACTGGATTAATTCTGTTTTTAATACATAATTCTGCAATATTTTTGATTTTTTTTTTGTGTGTGTGTGTATGTATGTGTTCTCTCAATTGTTGACACTACTTAGTATTAAAATATATGTATTCATATCATTCTTTAGCAATATATTTAACTAGATTAAGTATCAAAATGCATTCAGATTTTCAAAATTAAATTTTATAAATATAACTTCTTATAAAGAACAACTATCAAGCAGTAGTTTCCTAATATAGGTACAGCTTCCCCCTTCAGATTAATTAATTCTGTAGCCAGACTTTTGTATAATGACTATTATATGTTATTTTTTGCCCAGTGTTATACACAAGTAATAAAAGAAGTTCTTGAAACTACAGGCAGTTTATAAGTTCTTTGAAGTACTTTTGTAATTCAAATCTACTGGGTTAAAAATAAAGAAAAAAGCTCAGTTAATAGTGTTTTGCAAACATACTTCTATAAGTTCGATTCTCAGAAGTCATGTTTAAAAAATGTCTCATGTTGCCTGAGCTTAGAATAGTAGTGTTCATTCAGAAGTCAGAGATAGTCAGATCCTGGGCACTCCCAGGGTGGTCCCAGGAAAACCTTGCCTACAAAAAGGCTGAGCTAACCTCAAACAGAAACCTAGATTGTGTTTGCCTTGTTTACTCTTCAGCACACACACCTACTCACGCATGTGTACCCATATATAGAATATTGAAGTTGGAGATGTAGTTCAGTAGTAGAATGCATGTGTGTCTACTTAAGTCCCTGAATTCAGTCCTTGGCACCAAATAGCCAAATAGTATTGTTAAATAAACTGCCGAGAATTACATATCATCCATACAGAATCCCTCCTGTACTTAGGTGCTTTGAAAATAGCAGTTCTCATTCATGCTTTCCTCATCCTCTCCCCTTTTATTTATGTATTTTGAGATAGTGTATTGTTGCAAAGCCTGGGACAGTCTTGAACTTACGATTCTCTTTCTCAGCTTATTGAGCACTTATATTACAGGTCTGCACCACACATTTATTGGATTCTTTCTTTTGTTTTGGGCATCTGTTTGTTTGGTTTGATGGTTTTGTTTTGTTTTATATTTTGGTTTGTTTTTTTTTTTTTACGGATGCCNNNNNTTTTTTTTTTGGAGACAAGGTCTCACCGTGTAACTAGCTGGCCTGGAACTCACCATGTAGACCAGGCTGTCCTCAAACTCAATGCAGTTCTGTTCTGCCTCCTGAGTACTAAGATTAAAGGCATGTGCCAGTCAGCTTATGATCCCATTTTTAAATGAGTGTTAGAAGTCTGAAAATTGAATAGAATGTTATAGAAAGAAATTTGTACTTTTTGTTCAAAACAG
Seq C2 exon
ACTTATAAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.414
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.7)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]