BtaINT0164439 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21391903-21392292:+
Coord C1 exon
chr7:21391903-21392042
Coord A exon
chr7:21392043-21392159
Coord C2 exon
chr7:21392160-21392292
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
GAGTCCCTCTCGTCCCACAGGCG
3' ss Score
9.1
Exon sequences
Seq C1 exon
AAAAAAGTGAACCCCGACCTCCCGATCGCAGACAAGCCCAGCACACGGGTGCGCAAGCTCGTGGAGGAGACACTGCGGAGGCAGCGGCAGCTGACCAAGAGGCGGCTGGGGGAGCTGCGGCGTTGGCACAATGAGACAAG
Seq A exon
GTGCAGCCTCGGGGCCCTGTGCGGTGGGAGGGCTCCCTACGGGCTCCCCAGGGCTCCAAGGGGACCACCTCACAGTCCAGCCGCCCCTCAGGGCCCCGAGTCCCTCTCGTCCCACAG
Seq C2 exon
GCGCTACGACTTGTGCAGGAGGCGGCTGGAAGAGGGGCCGCCCGTCCCGGATGCACACTCAGGACGCCCGCTGCCTGACCAGCACCTGCCTGCCCTCAGGAGTCGGCCAGGGGCGCCCACAGCCAAGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTGAACCCCGACCTCC
R:
CTGGCCGACTCCTGAGGG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]