HsaINT0185610 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3820180-3821477:-
Coord C1 exon
chr19:3821338-3821477
Coord A exon
chr19:3820289-3821337
Coord C2 exon
chr19:3820180-3820288
Length
1049 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCC
5' ss Score
4.12
3' ss Seq
GTCACGTCTCGGTCCTGCAGGCG
3' ss Score
9.16
Exon sequences
Seq C1 exon
AAGAAAGTGAACCCGGACCTTCCCATTGCCACGGAGCCCAGCAGCCGGGCTCGGAAGGTCCTGGAGGAGCGCATGAGGAAGCAGCGGCACCTGGCGGAGGAGCGGCTGGAGCAGCTGCGGCGCTGGCACGCGGAGAGGAG
Seq A exon
GTGCCCGGCTGCGGGTCTTGGCAAGGGGGCCTGGTGAGGGAGGGCAGGTCCAGCGTGGAACCTAGACGCCCACTGCTGCAGATTACGGAGCTCCTCCGTGTGAGCTCTCGAGCAGTGGGGGGAGACGGGTGCCCGGGCAGTGGGCACGTCCTGGTGTGGGAGCGTGAGAGGGTTCCAGAGCAGACGGGCAAGGGCACAGTGGCGTGCGGACCTGACACGTGGGCTCCAGGGCCTCCGTAGACGCAGGGACACTGCCGGCCAACTCGCTGGACCACACGGCTGCAGAGGTGCCTTGTGACCTGTGTCCCCCGACCCCCGGTGTCCCTGTGTCCCCGACCTCTAGTGTCCCTGTGTCCCCCGACCTCTAGTGTCCCTGTGTCCACCGACCTCTAGTGTCCCTGTGTCCCCCGACCCCCGGTGTCCCTGTGTCCCCCGACCTCTAGTGTCCCTGTGTCCCCCGACCTCTAGTGTCCCTGTGTCCCCCGACCCCCGGTGTCCCTGTGTCCCCCGACCTCTAGTGTGCCATGTGACCCCTGACCCCTGGAGTCCCCCTGACCCCTGGTGTCCCTCTGTCCCCTGGTGTTCCTGTGTCTCCTGACCCCTGATGACCCTGTGTCCCCTTACCCTTGGTATCCCCTGAGTCCCCTTGACCCCTGGAGTCTCCTGTGTCCCCCTGATCCCCTAGCGTCCCCTCATTCCCAGTGTCCCCTGTGTCCATCCTAGAGCATTTTCTGATGTAACATCTGACTCTGGTGTGTCCAGCAGCAGCAGGTCTGCATTGGGAAGGGAACCAGGACCTCCTGAAGGCCATGGCTGCCCGGGCTGGGCCTCATTTGCCTAAGGGGTGTCTTTGGCTGCCCCCCACACCAGCCTTCCCAGCCTCAGTCTTCTGTGCATACAGCAGGCACCCATGCAGTGCAGTGGAGCCCCAGCAAGAGCTTTGGCCCTTCCTTCCTTGCTGGGAGCATAAGGCCCCAGTGTTTCTGACTTGCCCCCAGCTTAGGGCCACTGCTGGCCTGACCATGCTCTGTCACGTCTCGGTCCTGCAG
Seq C2 exon
GCGGCTGGAGGAGGAGCCACCCCAGGACGTGCCGCCCCACGCGCCGCCCGACTGGGCCCAGCCTCTGCTCATGGGCAGGCCGGAGTCACCCGCCAGCGCCCCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.936 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGAACCCGGACCTTCC
R:
CTCCGGCCTGCCCATGAG
Band lengths:
223-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)