DreINT0177945 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4688686-4689440:-
Coord C1 exon
chr22:4689295-4689440
Coord A exon
chr22:4688816-4689294
Coord C2 exon
chr22:4688686-4688815
Length
479 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
3' ss Seq
ACTGTCTGCTTGTCTTCCAGCAG
3' ss Score
9.58
Exon sequences
Seq C1 exon
AAAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAG
Seq A exon
GTCTGCGGCTGCTTTCACTTTATTTATGAACTCTTTTTACCAATATGGCTTATTTATCTTCCTTACAATAACACTGTACTGGACTTTCAACAGAAATTTCATTTATAATAGTTTTAAAATGGTCTTAAAAAGTCCTAAGTTTGACTTGATGAAACCTGTAGAAACCCTGTACATCAGTGTTTCTCAACCACGATCCTGGAGGACCACCAGCTCTGCACATTTTTCCATGTCTCCTTAACCGAACACACCTGATTCAGATCATCAGCTTATTAGCAGACAAGGAAAGACCTGTATTAGGTGTGACAGGCAAAGGAGACATCCGAAACATGCAGTGTTGGTGGTCCTCCAGGAAAGTGGTTGAGAAACACTGCTCTAGATAATATATAATATAAAACAAACTGTATATTTCAGATCCTTTTTTAATACTTATGATGGCATCATTTATTGTATTTATATTTGACTGTCTGCTTGTCTTCCAG
Seq C2 exon
CAGGAGGTACGAGGAGGACATGTACTGGAGGAGGATGGAGGAGGAGCAAGTATACTGGGCAGAGCCAAGGCGCAGGATGGCCCCGCCTCCTCTCATGGGCCGGCCCAGCATCCCAGTGCCCCCTCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.888 A=NA C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGAACCCAGACCTCCCT
R:
AATAGAGGGGGCACTGGGATG
Band lengths:
272-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]