RnoINT0168827 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11340818-11341457:-
Coord C1 exon
chr7:11341318-11341457
Coord A exon
chr7:11340951-11341317
Coord C2 exon
chr7:11340818-11340950
Length
367 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
GTCCCCGTCTGGCCCCACAGGCA
3' ss Score
9.79
Exon sequences
Seq C1 exon
AAGAAAGTTGACCCTACACTTCCAGTGGCCACCCGGCCCAGTGGCCCCATGCAGAGGGTGCTGGCCAAGCGGCTGCAGAGGCAGCGGCAGCAGACACAGGCACGGCTGGAGGATGCACAGCGCTGGAACTCTGAGCTGAG
Seq A exon
GTGACCATGGCGTCCCCTCTTGGCCTCCCTACAGTCCTTCAACATCGGATATTCCAAACCCTCTCAAATGTTCCCCCATGACCCCTGACCTCTAATGCTCCCATGTCCCCTGATCTCTGATGTCCCCATGAACTCTGACCTCTGATGGCCCCATGAACTCTGACCTCTGATGGCCCCATGTCCCCTGAGCTCTGATGGCCCCATGTCCCCTGAGTTCTGATGGCCCTATGTCCCCTGAGGTCTGGAGTCTTTGCAACTCCTCCCGCCTCACCCTTCAGACTCTCCCTGAGCCCTGGAGCTTGACTGTCTGTTGGGCTGGCTCAGGCCTCTGGCGACCACAGCCCTGTGTCCCCGTCTGGCCCCACAG
Seq C2 exon
GCAGCAAGAAGAACACAGCAGGCAGCCAGAGGAGCCTCCACAGCCCCAGGTGGAGGAGCAGCTGCCCGGGTCACCCACCTGGGCATTGCCAGCTCCCACTACCAGACCAGGGATGGCCAGCCCCCGGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGACCCTACACTTCCAGT
R:
CCATCCCTGGTCTGGTAGTGG
Band lengths:
254-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]