BtaINT0164450 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21383290-21386358:+
Coord C1 exon
chr7:21383290-21383576
Coord A exon
chr7:21383577-21386172
Coord C2 exon
chr7:21386173-21386358
Length
2596 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CCGCCCTCGCTCTCTGCCAGCAG
3' ss Score
5
Exon sequences
Seq C1 exon
GACCAAGCTACCCAAGCTATGACGCGTCCTCCTACTCCGTGGCGGGTCCTTACTACCCACCGCTGCTCACCCCACAGATGCAGCCGCCGCCGCCGCCACCCCCACCCCCAAAGCCTGTGGACTCATCCCAGTGGGGTGGCCCAGTAGGCAGTCCCAGTGCCAGCTGCACCAACAGCGTTGCCAAGAAGCTTCCAGTTCCCAGCAAGCTGCCCAGACCCCGGACCGGCCCCCAGCCGCTCCCGCTTCACTACTGTGACATCTGCAAGATCAGCTGTGCCGGCCCCCAG
Seq A exon
GTCAGGCCCCCACTCTGGCCCCTGTTGGGAGGCCCAGGGGAGCCCCCTGCCCCCATAGTAGGGGAGTCCTTCCTCGTCCTTGCAGCCGGCCAGAGGGCAGGGTTGTTACCTGCCCAGAAGAGGCTTGTTAGTAATTTGCATCATCAAGTGGGCATCAGCATGGCCTTAAAACTGCCTGATGTTCTTGTGGAAGACATGAAAGCCGGCCCAGCTCTGGGTGTGGGCCGCAGCAGCGTCGTCTTGCACTCTGAGGCTGTCTGCAGCAGGGAGGCACTCATGCCCCCTCCTGGACATGAGGCCCAGTGGATGTGGCTGGTCACAGTGGAACTTTGCTGCAGGGCTGGACAGGCAGCGTTGTGTAGGAAGGGCCATGGAGACAGGCCTGCGGCCAGGTAGGAGCAGCACGTGTGTGTGCATGTGAGTGGGCCTGTACTTCTCTGTAAGCAAAGGCCCTCCCAAGCCACGATCGCAGGTAACCCAGCTTGCTCCCTGCAGAGGTCATCAGACACTAGGGCTCGTCAAGCTGCCCCTGGAGGCCTGTAGAGACTCCCCATTGTGGACTGCAGAGACTTGGGAGGCACCCATGCCTGTCTTCTCCAGCCCGAATTCCTGGCTGAGGGTTAAGGGCCAGGTCCCCCACACTCAGGGCCTCGACGCCAAGACCCCCAGCTGTCCATGGTCCTTCCCTCCTCAGATTTCAGGGCATCCCCACTCCTTGTGCTTCTTTCCACTGCATGACTCTCCTTTAGACATTGGCTTTCCCTGTTCCCTTCTTTATTTCTCTGCGTGACTTTAAATTTGCATCGTAAGGATTCTTGGGTATTGTCACCAGTCAAACACAAGGTCTGCTCTGTGATTCTAGACCCTTCACGGCATCACACTGAGCAAGCGTGGGACGCTCCCCACAGATGTGGGATGGGATGGGGTGTGGGCATGTGAGCATCACCCGAGCGGTGTCAAGGTCTCTCTCAGCCTTGTCTCCCATGGGACTGGGTTTGCCCAAGTGCATCATCACTCGGTATAGCATCTGGCACATAGAAATGTCAGCTCCTGTTATTCCCAGCTTTTTGCTAATGTTAGCAGCGCTTTTGCATTGGCATTTTTATTGAGGTAGCGGTGGGTTCACATGTGGTTGTAAGAAAAACTGCAGGGAGGCCCACCAGCCTGCCTCCAGTGCTGACGTTTGTTGACCTTGAACCTGCCGCCTTAGTCAGGTGGCAGCTTAGTCAGATGCCCCTGGTTTTACTAGTCTCAGTTGCACCCGTGTGTGCCTTTGCATGTGAGTATGTGTGTACATGTGGTTTGCTCTGTGCAAGCTCATCACTTGAGCACGCTCACGCATCTGCCGCTGTCACCACCGCCACCACCAAGTCGGGCATTGGGATGGCATAAGCTGTGAACACATGCTCTTTCTACGAGGTGTGTTCTGAAGTGGTTTACCATTGGCACCTTGGTGTATCTCTTTCTAGGCTGCTCTCTCTCCATAGGCTCTTATGTCATGTATGTGTTTGTGTGTGCACATATACTCATCTGTGTATGTGTGCCTGTGTTATATGTGTGTGTGTGCATGTGTATGCCTGTGTGCATGTGTATATGTGTGCATGCATGTGTGTGTGTATGCGTGTCCTGTGGCTTAGGTAAAGACAGATGCCTGCGTTCCGAGAGCACTGCCCCAACTCCTGTCCCTGCCTCCTTACCCACCCCCAGAACCAGCCAAGATCACCACTGCCTTTCATATTTCCCAGAGGCCTTTCTGCTCTGAGGGTTATTGGCTCTTGGTGTGGGTAGAGGACATCGGGTCAGCAGGCCCCCTTCCAGGAGACGAGTCAAGGCTGCCCTGTGAACACTCGGTCACATGTCTGGTATCTCAGGTGCCCTGGGGCAGGAGCCGTGGGTCTGTGACTCACGAAGTCCCCTCCTGCGTGGACTCACGGTTTGGAAGCAGCACCTTAATAAGAAGTGTGTTCCATGTCTTTCTGGTAACACGCGTCCTTGCTTGGCTTCTGAGGTCAGATTCTGAAAAGCTGGAATATTTTTTCAAGCAGCCTCTGAAACTAAATGTGTTGTCTTTTGAGGATGCTTGCTTCAGAAACTCAGCGATTTTTAGAAGAAGGAAACTTTATGTTTTTCAGTCTGAGCTTCTAGGTCTGTTGCCTGGACTTTATTATTTTTTTTTAAGATTTTATTTATTTTGTCTGTGCTGGGTCTTTGTTGCTACGCAGGCTTTTCTCTAGTTGTGGCAAGCGGGGGCTACCCTCTAGTTGCGGTGTGAGGGCTGCTCATTGCAGTGGCTTCTCTTGTTGCAGACCACAGGCTCTAGGACGCATGGACTTCAGTAGTTGTGGCGCACGGGCTTAGTTGCTCTGCCCCGTGTGGGGTCTTCCAGGATCAGCGATTGAACCTGCGACCCCTGCATTGGCAGGCACATTCTTAACCACTGGACCACCAGGGAAGTCCTGACTGGGCTTTAAAAGGTGGTACACAAACCTCTGGGAGGCCCATGAACAGAGGGGTGGGGACACCAGACCCCTGGGAACTGTGGGGAGATGATGCTGGGTGGGCACACCCCCATCAGGCCGCCCTCGCTCTCTGCCAG
Seq C2 exon
CAGACGTACCGCGAGCACCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCAGCCCAGAAGATGGGCGTCCAGCCCAACGGCAGCCCGCGGGGGGTGCAGGCGCAGCTGCGCTGCGACCTCTGTGCCGTGTCCTGCACCGGGGCAGAGGCCTACGCTGCCCACATCCGGGGGGCCAAGCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.516
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(50.0=13.5)
A:
NA
C2:
PF128742=zf-met=PD(42.3=17.7),PF128742=zf-met=WD(100=40.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]