GgaINT0110823 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:165973429-165975451:-
Coord C1 exon
chr1:165975207-165975451
Coord A exon
chr1:165973621-165975206
Coord C2 exon
chr1:165973429-165973620
Length
1586 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGTATTATTTATTTAAACAGACT
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTACTTCTTATTCTGGCTATGAAGCCGCAGTGTATTCAGCTGCATCATCCTATTACCAGCAGCAGCAGCAACAGAAACAGGCAGTGGCAGCTGCTGCTGCTGCTGCTGCAACAGCCGCTTGGACAGGGACCACCTTTACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTATTGCGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTACCTGTATTATGTAATATTCTGTAATACATTTTAGTCATAATTTCTATAGCTAAAAAAAAACTGACCCCTTTAAGAATATTCGTTAATTTTTAAGGACCCAATTCTATAATTTTACTAAAGGAATAATTAAATGAAAGTGTGTGCTATTATTGATTTACTGAGAAGTTGAAAAGGTACATTCAATTAGCTTGTACAGAAAAACTTCAACTGTACTTTAGACTCCAGAAGTACTCTAAACTTTGAATTTGATTTGCTGTTTTAGCATAGCAAACTTCTTAGAAAATACTTGTTTTCAAAACTACTGAAGTATACCAATTTTGTTTATGGTAAGCCTGAAAATTTATTTCTCCTTGTATTCCATCATCCCAGTTTAGTTTCACAGTGGGTACAAGTGTGTAAAAAGTAGATATCAATTCATGTACTTTTTTGTGTGTGTTAGGATAAACAGTTATTTACGTAAATCTATCATTAGGATAAACAGTTCTTTAAGTAAATCTATCATTATTTCCCACTGTCTGCTCTCAAGCTTGCCAATGTTGGTATAAGAGCAAATCTCTACTACATTTCATTTTCAGCACAGCTTTATGTGCTACCTTCTTTTTCTTTTGAATCAATTTTTTTAGTTAGAATACACTTAAGCACAGTCATCATACAGACCGAGGAAAATTCCAAATCAAGACTAACTCAGTGCAATGCAGGAAACTGCAACTGAAATGCAGTTTTGTGATTATATCAAGTTTTCAATAGCAATATCTTTTGAATAGTACTTGATTGAAGAAGCGAGGAGGTAGAGGAGGAAAACTCAGATTGTATTACCTCTGAAAATGGAATTCTGGTGGAGGAGACGTATCATGGAGTTATTTCTAGATCTTTGTCCGTGACGGGGGCACAAGCCCAGAAGGAGACAAAAGAGGGGGAGGGGGAACAAAAAAAAACACCAAAATAAACAACTACCCCACCTTTTGCGGCGCGGCAGGCCCCCGCCCCCAGCCCGTGGCTAATGAGGCAAGGCGCTTGCAGGCCGTGAGCTCCGGGAGAGGGGGAAGGGTAGGGAGGTAGCAGATGGGTCTTAAAAAAAAAAAAAAAAGAGAGAGAACAGTGTCCAAATACGAGGTCTTACGCTAGTAGACTACAGGAGAAGCACATGCTTTTCTCCACGGCAAACCGAGAGACAGTGAATCAGCGAGAGGGAGAGCCACTGCTATCCTACCAGGAGCTCCACCTTTTTTCCTCTGCGCGCCAAGTCCTCTGGGGAATGCTGCTCCTCCCCTCCCAGTACCCAAAATGCCCAAAAAAGGCAGTCCACAAAACCAAAACATTAACTCTTTATCTTCCACTGTTTTACATGATGTTCTGATGTGGAATACCGAGAACAAAAATCACAGAACCACAAGAAGATGAGAATTTGTCTTACAAGTAGCCTGCTTATGCCTTAGAGCATGTCATATGAAAGAAATGTTAGCATAGCAAGTATTTCTTAAACAAAGCATATATTTTATGCTATTTTCTATACTACATGTATTCACATGAATGATGAACATGCACTATAAAGGCAGCTGTGTGTGTATTATTTATTTAAACAG
Seq C2 exon
ACTTATAAAGAACACTTAGAAGGCCAGAAACACAAAAAGAAAGAAACAGCATTAAAAGCTTCCCAGAACACCAATAACGGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGAGGAGCCAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.9)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAACAGGCAGTGGCAG
R:
TCCTCGGATATGGGCAGCATA
Band lengths:
353-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]