GgaINT0110823 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N855]
Coordinates
chr1:161052451-161054473:-
Coord C1 exon
chr1:161054229-161054473
Coord A exon
chr1:161052643-161054228
Coord C2 exon
chr1:161052451-161052642
Length
1586 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGTATTATTTATTTAAACAGACT
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTACTTCTTATTCTGGCTATGAAGCCGCAGTGTATTCAGCTGCATCATCCTATTACCAGCAGCAGCAGCAACAGAAACAGGCAGTGGCAGCTGCTGCTGCTGCTGCTGCAACAGCCGCTTGGACAGGGACCACCTTTACTAAAAAGGCACCATTCCAAAATAAGCAACTGAAACCAAAACAACCTCCCAAACCACCCCAGATCCACTATTGCGATGTTTGTAAGATCAGCTGTGCTGGACCACAG
Seq A exon
GTACCTGTATTATGTAATATTCTGTAATACATTTTAGTCATAATTTCTATAGCTAAAAAAAAACTGACCCCTTTAAGAATATTCGTTAATTTTTAAGGACCCAATTCTATAATTTTACTAAAGGAATAATTAAATGAAAGTGTGTGCTATTATTGATTTACTGAGAAGTTGAAAAGGTACATTCAATTAGCTTGTACAGAAAAACTTCAACTGTACTTTAGACTCCAGAAGTACTCTAAACTTTGAATTTGATTTGCTGTTTTAGCATAGCAAACTTCTTAGAAAATACTTGTTTTCAAAACTACTGAAGTATACCAATTTTGTTTATGGTAAGCCTGAAAATTTATTTCTCCTTGTATTCCATCATCCCAGTTTAGTTTCACAGTGGGTACAAGTGTGTAAAAAGTAGATATCAATTCATGTACTTTTTTGTGTGTGTTAGGATAAACAGTTATTTACGTAAATCTATCATTAGGATAAACAGTTCTTTAAGTAAATCTATCATTATTTCCCACTGTCTGCTCTCAAGCTTGCCAATGTTGGTATAAGAGCAAATCTCTACTACATTTCATTTTCAGCACAGCTTTATGTGCTACCTTCTTTTTCTTTTGAATCAATTTTTTTAGTTAGAATACACTTAAGCACAGTCATCATACAGACCGAGGAAAATTCCAAATCAAGACTAACTCAGTGCAATGCAGGAAACTGCAACTGAAATGCAGTTTTGTGATTATATCAAGTTTTCAATAGCAATATCTTTTGAATAGTACTTGATTGAAGAAGCGAGGAGGTAGAGGAGGAAAACTCAGATTGTATTACCTCTGAAAATGGAATTCTGGTGGAGGAGACGTATCATGGAGTTATTTCTAGATCTTTGTCCGTGACGGGGGCACAAGCCCAGAAGGAGACAAAAGAGGGGGAGGGGGAACAAAAAAAAACACCAAAATAAACAACTACCCCACCTTTTGCGGCGCGGCAGGCCCCCGCCCCCAGCCCGTGGCTAATGAGGCAAGGCGCTTGCAGGCCGTGAGCTCCGGGAGAGGGGGAAGGGTAGGGAGGTAGCAGATGGGTCTTAAAAAAAAAAAAAAAAGAGAGAGAACAGTGTCCAAATACGAGGTCTTACGCTAGTAGACTACAGGAGAAGCACATGCTTTTCTCCACGGCAAACCGAGAGACAGTGAATCAGCGAGAGGGAGAGCCACTGCTATCCTACCAGGAGCTCCACCTTTTTTCCTCTGCGCGCCAAGTCCTCTGGGGAATGCTGCTCCTCCCCTCCCAGTACCCAAAATGCCCAAAAAAGGCAGTCCACAAAACCAAAACATTAACTCTTTATCTTCCACTGTTTTACATGATGTTCTGATGTGGAATACCGAGAACAAAAATCACAGAACCACAAGAAGATGAGAATTTGTCTTACAAGTAGCCTGCTTATGCCTTAGAGCATGTCATATGAAAGAAATGTTAGCATAGCAAGTATTTCTTAAACAAAGCATATATTTTATGCTATTTTCTATACTACATGTATTCACATGAATGATGAACATGCACTATAAAGGCAGCTGTGTGTGTATTATTTATTTAAACAG
Seq C2 exon
ACTTATAAAGAACACTTAGAAGGCCAGAAACACAAAAAGAAAGAAACAGCATTAAAAGCTTCCCAGAACACCAATAACGGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGAGGAGCCAAGCATCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=15.9)
A:
NA
C2:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAACAGGCAGTGGCAG
R:
TCCTCGGATATGGGCAGCATA
Band lengths:
353-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]