DreINT0177957 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4699621-4703168:-
Coord C1 exon
chr22:4702819-4703168
Coord A exon
chr22:4699804-4702818
Coord C2 exon
chr22:4699621-4699803
Length
3015 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTACTTTGCTGTCCCGCAGACT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CTGGTCTCAACTATTCCAGCTATGACTCTAGCGGTTACACATCTACACCTTCGTACTATCAGCCGGCTCAGTGTGCTCCGCCGCAGGCCCAGCCCCAGCCGCCTCTGCAGCCGCCGCAGCAACAGCCACAACCACAACCGCCACCGCCGCAGCAAACCCAGCAGCCGCCCAAACAGCTCGCCAATTCCTCCTGGAGCAACAGCGGTGGCAGCAGCGTCTCCAGTCCTGCTGTCAGCTCATACAGGAAGCCGGCTTTCCACCAGAACAAGATACAGAAGCCTAAAGGTCCACCGAAGCAACCGCAGCTGCACTACTGCGATATCTGCAAGATCAGCTGCGCCGGTCCACAG
Seq A exon
GTGAGCACATGCATGAACATTTACATTCACTAAAGGGACACAGATATACAGGCAAGTTACTGTAATGTAGGGCGGCACAATAGCAGAAAAATCTGGCATGGTGATAATCAGTTCATAGTAGTGTAGTGGATCACAGATCACGTTATGGTTTAAGTCAAGGATCGGAACATTTTTCGGATCAGCCAAAAAGGGGAGGAGGCAAATGTAATTTGCTTTCTATTTATTACAAAAACAGCACTGCAAGATAGAGATCTGCGCAGGACTAAATTTTGAATCCTGCACCCGCCAGGTTTTAGCCCGAACCCGACCGCTCCCGCTTATATTCAGCATTTGTTGTCCCGCTGCCCGACCCGCCCCGTTTTCTACCCGCCACGCCCCCGGATGCGGGGAGAACAAAACTGAAAACTACCCAGCTATACAGTGTCCAGACAGCCTGGCCCAGCTATACAGTGTCCAAGGTCGCTCTGGCCGCCCTGGCGACAACGCTGTCTGCCTTCAACTCCGGCGGCGAGAGCGTCAAAACTCGCTACATTAATCTCGTACTTAAAGGAGCCATTGCAGCATTATCAGTTACATTCCTGCATAAGACATGTTTTTAGCGTGAAAATGTTGCGCACTTCTTATCAAATTCATATAACAATGGAAGATCAAGTTGCATGTGGTGTGGCTTTGCTCTATTTATCCAATATGTGTCCATATGTCTGAAATATCCTGAAGCAGCAGTACTGTCACATCGCGTGAGATTCCCGCTTTTTAAAGATAAATTTATGTAACATTAATGAACATCAGTAACTCGCCAGTAATTTATTTAATGTATGTTCCTGTAAGACAACATTGTAAATAATTGGAAATCCGGCGACCGCAATAATCAAACCCTTGGGAACAACTGTGGTCGGAACCAAAGTTCACAGGTCTGTGTTCCCTGAACTGTTATCAAGCGGTGGACATCTTTATTCTGATTGCTTGCCGCCGAACTGCGTCATAGCTCATTACCATAAAGTTGACTTCATTTCAACTCTCCTCGACGCTCCCGCCGGCAAAGACGCGCCGCGCTGCTCCTCGCCGCTTATCGTCGCCTATCGCCGCCGGCTCTCATTGAAAATGAATGACTTCCGGCTACTTTGACGCTCTCGCCGCTTTCGGTGTGAACGTACGGTCACCTGTTACCGACTGCTCCCGCACTTTATTCAGAAATGTATTCCTGCGCCGCAAAAATGTGGTCAGTGCCCGCGGTACAGCCGCGGGAATGCAGACCTCTACTGCAAGACACTTGCTTTTAACAAACAGAATTTAAAACTTGTAATTTTATTAACAACAAAATGATGAAACCATCAGATGAATAAAAATTCCTCATTGCCTCATTAAATGCATATGACGGAGATTTTAATCTTTACCATAAATATCAGTGGTTTTATCTAAACTGTAAACTGTTATCACAGTACCTCTGTGTTATTATAAAATATGTTATTATGGAATAGGAGTTGTTACCCTCGAGGAAAAGATTCGGAGTACCTTGCTGTAGATTAAACAGATATAAAAATTATTTTTATCCTACGAGCATTAAGCTATTAAATAATAGTGGTGGCTTATTGAGAGTATCAGTTTGCTTATTTATGTGTATATGGAGTGAGGCTTGTAAATTTTATTGAAATACTTATTTGTGTTTTGTATGTTTATTGTTTTGTCCATGTTTGTAACGACTGCAGCTAAGGGCAAGTGCCTAAGACAAATTTCCCTAACTGGGACAATAAAGTTTTTACCTTACCTTATTTGATTGTTTGTAACAAACAGATTTGAATGCAGCGATTCGCAGGATAATTAAACAAATGCGAATCACTATCGTTTATAATTTATGTTGCGTGGGTGTTGAGATCCCGATCTTTTAATGATTATTCGTGCAGCTTACACTGAATGCATTAATGCAGGCTAAACAAGTAGTGACAGAAAGCACCTTTAATCACCTAAGAAACCCCCTACATCCCAATTAACCCACCATAATTTCTTCTGTCATCGTTATGTTTTACAGGAAAGCCTTAATCCTTTGATACATGTAATTTTAATGATGCGAGAGGTGATCTCTCTGCAATCGTTGCAAATTCAGGATTAATCTACAAGTAAAAAATGTATTAATCCGCGAGTCATGCCTGTTCCGAAATGTGGGTTGTGATCGGTACGAATTACGAATCAACCGTGATCCGTTGCACCCCTAATAGTTCATAATTATTTAAACTTTAAAAAATTAAATTAAAATAAATTAAAAACATTGTGGCCAAAATAAATATTTATATATGTTAGTTTTATTTATTTTTCACTGTTTGCACTTTGTAAATACGTGAAAGTAATTTTAAAAACATCCATTTTCTGCTAACATTTGAGTGCTGATTGTGTTCATATGCTCAACAGATATGATTGGCCGTGAAGGTCATCAGTTCACCACTCTTCACCGCTGTTATACAGTTATAAAGGACAGAGAAAACAGGCCAAAGATGAGCTTAAAATGTGCTTGCAACTGTGCTGTTAAAATATATCAGCTGCCACGTTAATTCGATGTGCACACAGTAATGGTGTGTACGATTTATGGAGCTGGTAATTAATTTGATTGACCTGAGTTTAATCATAACTAATAATTAAATTTAGAATAAAGATAGATGCACAAGGCAAGCTAAGCTAGAGCTACACTCAGCAAGACAGCAACAATCGATCAGCCCTTCACAGTCATTTCTGTTGAGCATGTTCGCATGATGGAGTTTCTGCAACCGCCTGCTGCTCCTGATGGCGCTTGCATTTAAACTGACTTTCATTTTGTTTTACTCTTACACAACTAAATGAATTTTTTGGTCTATTTAAAAGACTGTATTTTAATTCCGTTACATCATCAATGCTTTAACAGGAACTTTATGAAATTAGTCATATCAGTCTTTCACCTGAAGTTTATACGTGGCCATAAAAACTCTTGACGCTGGTTTTCATAAAACATATTGCTTTATTTAATGTTGTTACTTTGCTGTCCCGCAG
Seq C2 exon
ACTTATCGGGAACATCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAATGGCCCCCGTGGCGTCCAGACACAGTTGCGCTGTGAACTGTGCGACGTCTCGTGCACCGGCGCCGACGCTTACGCTGCGCACATTCGCGGATCCAAACACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=11.0)
A:
NA
C2:
PF128742=zf-met=PD(44.0=17.7),PF128742=zf-met=WD(100=40.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]