RnoINT0168822 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11344592-11346781:-
Coord C1 exon
chr7:11346585-11346781
Coord A exon
chr7:11344772-11346584
Coord C2 exon
chr7:11344592-11344771
Length
1813 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CCTTCCACTCTTTGTTGCAGACC
3' ss Score
10
Exon sequences
Seq C1 exon
GACCAAGCTCCCGCAGCCCCGACTCGGACTCGGTGTCGCCGGACTCGTGGGGTGGCCCGGTCCTAGGACCCTGGGACCCCACCTTTACCAGCGACGCGCTGCCGTTCCTGGACAGGCTGCCGAAGCCCAAGGCGGGCCCCAGGCCGCCCTCCATGCACTACTGCGAAGTTTGCAGGGTCAGCTGCGCGGGGCCGCAG
Seq A exon
GTCAGGACCGGCAACTGGATGGCTCAGTGTCACCCTCTATCAAAAACTATAGTGGCAGATGTGCCACACCGCAGTGGAGGCAGGGGGATGGGGAATTCAGGCCATCCTTGGTTACGTGATGAGTGTGAGGCCAATCTGGGCTCCGTGAGCCTGTCACAGTTCCTCTGCAGGACCAGGGTTTGGCTCCCAGGCCCACGTGGCGAGGTCCTGTACCCTGTAACCACGGCGCCCTCTGCTGGCCACCTCAGGCAGGCAGGCACAGACACATACAAGCAACACACCCCACACAGAAAATTATATTTAAATGTATGGAGAATGGGGTGGAAAAGAAAGCAGAGAAATAGCCTGTCAGAATCATAGGCTGCTTTCCAGACATCCTTGAGGTCACAGTCCGCCCCCGCGCGCACACACATACATCCATCACACAACACAGAGACATAAACACAGAGATCCATACACAGATGAACGCACACAGACACGCGCGCGTGCACACACTGGTTTGAAATCGAGAGTGTTGCACTCTCGCTCTGTAGCCAAAGCTGGCCTTGAGCATGCAATCCTCCTAACTCATCACCCTCTTAATTTTAATCCCCCCATCCCCCGTCCCCCTAGCCCCGCCCCGCCCATCAACGCCCCAGCCGGTCGTTTTGTTTCTGGGCCGCCTTCAGTCCTCTAGCCGCGCCTAGGCTGTTTGGCCATGGCTGGCCTAGCTTTCCCAATTCTAAGAACGGAGCCTTTTCTCTCTGACATGGGCCAGTGACCTGGCTCTGTGGGCCCTGAAGCCTGGATGTGGTATGGTTTGTGGGTTTCTCATCTGCAGAGCCCCCATGTGGAAGATCCCTGTGAAATCACATGCAAGTGTATCACATCTGTTGCTCTCTTTTTTAAAAATTATGTTATTGTCTGTGTATGAGTGTTTTGACTACGTCTAAGTCCATGCAGCACATGCGCACCTTGTCCATAGAGACCACAAGAGGGCGGCGGATACCCTCCAATTTTGTTCTTAACACTGAGCCAATTTTCCAACCCGTTTTGTTGTCACCTTGGGTTATTTGTTTGTTTGTTTGGTGACAAGGTCTCTCTGTGTAGCCCTGGCTCTCCTGTAGCTTGCTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCTTGCCTCTGCTTCCCAAGCATTGGGATTAAAGGTGTGTACTGCCTTGCTGAGCCGGCTGTGGGTTTTTTTTGTTTTGTTTTGTTTTTTTGTTGTTTTTTTTCTTTTCTTTTTTTCAGAGCTGGGGACGGAACCCATGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGAGCCGGCTGTGTTTTAAGGACTGTCTCCTGTAGCCCAGGCTGGTCTCCTGTAGCCCAGGCTGGTCTTGAGCTCACTATGTAGCTGAGGATGACCTTAAACTCCTAATGCTCCTGCCTCAACCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCTTCCTCCTCCTCCTCCTCAGAGGGCAGCTCCTAAGGTCCTGGGAACAGAACTCAGACCTTTGTCCCTGAACTTCAGCCTGGAAAGGCCAGGTTTTGCTTGGGGGCAGCCCCCTGCTCCCATACAATATACTCAGGACCCTTGGTGAGTGTTTCGTTGAAAATCCCGTCTAGAGTTTAAAGAGACATCCATGCGTCCCATAGGCCCTGACTCTTCTAACTTAGGGCACAAGTGGTGGAGGAAGCCAGGGACCCTCTGTGTGGGTTCCGGTAAGGGCCACCCCTCAGGCCTTCCACTCTTTGTTGCAG
Seq C2 exon
ACCTATCGGGACCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGGCAGCTCAGAGGACCCGCACGCAGCCCAGTGGAGGTCCTAGAGGATCCCAGAGCCTTCACTGTGGCCTGTGTGCTGTGTCCTGCACGGGGGCGGACGCCTACGCTGCCCACATGAGGGGAGCCAGGCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=19.7)
A:
NA
C2:
PF128742=zf-met=PD(40.0=16.7),PF128742=zf-met=WD(100=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCGGACTCGGTGTCG
R:
TGGCTCCCCTCATGTGGG
Band lengths:
347-2160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]