MmuINT0180114 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81239934-81242174:+
Coord C1 exon
chr10:81239934-81240214
Coord A exon
chr10:81240215-81241994
Coord C2 exon
chr10:81241995-81242174
Length
1780 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CTCCCGACTCTTTGTTCCAGACC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GACCAAGCTCCCGCAGCCCTGACTCGGACTCAGTGTCACCCGGCCCGCAGCGTCCTCCGCCCTCCTCCCAGCGGGCCCCGCAGAAGCTGCAGGCACCGTCCCCGCCGCCGGCTCCCGTGGGCTCGGACCCGTGGGGTGGCCCTGTCCTCGGGCCCTGGGACCCCACCTTTACCAGCGATGCGCTGCCGTTCCTGGACAGGCTGCCGAAGCCCAAGGCGGGCCCCAGGCCGCCCTCTATGCACTATTGCGAGGTCTGCAGGGTCAGCTGCGCGGGGCCGCAG
Seq A exon
GTCAGGACTGGCAGCTAGACGGCTCAGTGCCTCTGTCCATCAAAAACTATAGTGGCAGGTGTGGCAGGAGCCCTGGTGCTGGCCTGTCACACCGCTGTGGAGGCAGGGGGTGGGGAATTCAGCCCACCCTCAGCTATGTGGTGAGTGTGAGGCCAGACTGGGCTCCGTGAGCCTGTCACAGGTCCGCTACGGGACCCTGGTTTGTTTCCCAGGCCCATGTGGCGGGTCCTGGATCCTGTGACCACAGGACCCTCTGCTGGTCGCCTCAGGCACGCGGTGCACAGACTCACAGGCAACACACCCTACACAGAGAATTAAATTTAAATGTATAAAGAATGGGGTGGAAAAGAAAGCACTGAGAGATAACCTGTCAGAATCATAGGCTGATTTCTAGAGATGCTTGGAGGTAGAGTCTGCATTGGTAACACACACACAAACATACATACATCACACTACACACAGACATACATCACACTAAACACACACACAGAGGGAGAGAGACCCAGAAACAGACAGAGACCCATACACAGATAAACGCACACAGACAACACTCGTGTGCACAGGCTGGTTTGATATCGAGAGTATTGCGCTCTCGATCTGTAGCCAAAGCTGGCCTTTAGCATGCAGTCCTCCTAACTCGATGCCCTCTTAATTTTAACCCCCCGAATCAGTCCCCCAAACAGGTCCGTTTGTTTCTGGGCTTCTTCAGTCCTCTCCCCGTGAGTAGGCGTTTGGCCACGGCTGGCCTAGCTTTCACAATTGTAAGAATGGAACCTTTTTTCGCCGACATGGGCCGAGTGGTCTAGCTCTGTGTACTCTGAAGCACAGATGTGGCTCTGATTTGTGGGTTTCTCCTCTGCAGCGCCCCCGTGTGGAAGAGCTTTGTGAAATCCGTGCCTGCGGTTGTGTGCAAGTGTGTCACATTCCCCAGGCAGCTCTAAAAAGGGGTTTTCTTTTATTACTCTCTTTTTTGAAAGTTACGTTTATTTTATTTTCTGTGTATGAGTGTTTTGTCTACATCTAGGTCTGTGCACCACATGTGTGCCCTGTCCATAGAGACTACGAGAGGTCTTCGGAGCCCCTTGAACTTTGCTCTTTTCCAATTCCAATGTAGCCAATTTTCCAGCCCTGTTTTGTTGTTGTTGGTTTAGGATTTTTTTGTTTGGTTGTTTGGTTGGTTTGTTTTGGTTTTGTGACAGGGTTTTTCCATGTAGCCCTGGTTGTTCTTGAACTCTTTCTGTAGACCAGACTGGCCTTGAACTCAGAGATCTGCCTGCCTCCTGCTCGCCTCTTGCCTCCCAAGTGTTGGGATTAAAGGCATGCACGACCTCGCTGAGCTGCTTTTGTGTTTTAAGGATGGTCTCCTATAGCCCAGGCTGGTCTTGAGCTCGCTATGTAGCTGAGGATGATCTTACACTCCTAATGCTCCTGCCTCCACCTCCCCAGACCTCAGAGAACAGCTCCTGAGGTCCTGGGAGCAGAACGCAGGCCTTTGTCCCCAAACTTTAGCCTGGAAAGGCCGGGTTTTGTTTGGGGGCAGCCCCTTGCTCCCATACAAGACAGGACCCTTGGTGAATGTTTCCTTAAAAATCCTGGCTGGAGTTTATTTAGGTCAAGGGAACGAGACATTGCCCTGACTCTTCTAACTTAGGGCACAAGTGGCAGAGGAAGCCAGGGACCCTGTGTCCCTTTGAGTTCCTACTAGCCAACTGTGTGGCCTGCAGATGAGTGTTGGTTCTGGTAAGGTGTCCGCATAAGGCCTCCCGACTCTTTGTTCCAG
Seq C2 exon
ACCTATCGGGATCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGGCGGCTCAGAGGACCAGCACACAGCCCAGTGGAGGTCCCAGAGGATCCCAGAGCCTCCACTGTGGCCTGTGCGCCGTGTCCTGCACGGGGGCTGACGCCTATGCTGCGCACATGAGGGGAGCCAGGCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=13.8)
A:
NA
C2:
PF128742=zf-met=PD(40.0=16.7),PF128742=zf-met=WD(100=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACTCGGACTCAGTGTC
R:
GATCCTCTGGGACCTCCACTG
Band lengths:
357-2137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types