BtaINT0164596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14220208-14222062:+
Coord C1 exon
chr6:14220208-14220355
Coord A exon
chr6:14220356-14221934
Coord C2 exon
chr6:14221935-14222062
Length
1579 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACATTCTCATTACAATGAAGGTT
3' ss Score
4.15
Exon sequences
Seq C1 exon
TTTGTATGCTGGCTCAGAAAATGAAAATGAGCAATTAAAGGAACTGCATGCACTCATGAAGGAAGACTTGACTCCTGTGGAAAGAGTCTACGTGAGGAAAAGTATTGAGCAGCATAAACTGGGGACCAATAAAACCCTGCTGAAACAG
Seq A exon
GTGAGAGGAAACAGCGTCAGTTGTTTATTTCTTTAATTTATGTATACGATTTATATTATTTTTATTCCTATTGAGAGGAATATTATTCCTGTTTTATTCCCCTTAAGTAAATTAAAAAAAAAACCAACTATGATAGCTTAGATTCAACTAAAGTGTGCCTGTCTATGCAATCCATGTTTTATTTTATTGACGCTGGGCAAAATATCCAAGTGAATTTTACCTTTGATGCTTTCCTAGAAAACCAAGCCCTTTGGGGTCTGTTTAAAATCTGTCCAAGAACCTGGGAGGCTCAGACCATGGATCCCAGGTGTTGGGAGCCCACATTGGACACACAGGGTCTCTGGCTTAGCAAGTAGCATCATCGCCTTTGTCAAGTTCTGACTCAAGACAGGGTGTCAGCTTTGAGGAAAGAAGTCTTCAGTAGCTTTCTCCTATAAACAAAGCATGGGAGAAGAAAAGGAGGTTGTCCACTTGTTGGACAGTGTGGACATGGGTCACTTTCTGCAAGAGATTTGGGACAGTCAACGTGCTTGGCACCGTTTCAGTGAGCTACTGCTGAAATACCATTGCTTAACAAACAAAATCTCAGTAACTAAAGACAACAAATTTAATGATTCAGTGATTCTACAGGTCAGTTGGTGTAGGTCAAACCTCTCATTCTGAGAACAGTTATCTGTGGCATGATGGCCCTCTCCTGACAGATGGCAGAAGTGCAGGAGGGCAGGATGGATCATATAGATACATGTAAAGCTTTTGTTCATAGCATGTCTGCTAAGATTCCTTTTGCTGTAACAGGTCATATGACCAAGCCCAGCATCAGTGGGGCTGGGAAATATACTTCATCTACTTCTCTTGGGGGGAAGCACTGCAAAGCCATACAGTAAAGGGTGTGGATGAGTAATAAATACTCTCACGGTGAAGGAGAGAAAATTGGAAATAATAATGTCTACAATAAGTTTTGGTTCCAGGAGTCCTCAAAATGCTTCAGACTAGCTTTTTATTATCACAAGTATGAACTTAACTTCCCTCCTTTTTCCCCAACCAAATCCAGAAGGGCTTAGTTTGACTACACTCAGGTAGTGCACATTAGTCATTTATGTGAACTACTTGGGCTTCTCTGGTGGCTCAGACGGTAAAGAATCTGTCTGCAATGCAGGAGACCAGGGTTCGATCCCTGACTTGGGAAGATCCCCTACAGAAGAGAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAAGAGCCTGGTGGGCTGCAGTCCATGGAGTTGCAAAGAGTCGGACACGACTGAGTGACTAGCACACACACACTTATTTTACATCCTTATCCAATATACTGATATGTTACTATAATCTATTGCTCATTGGTGTCACTTGTTCATAAATAAAATTTTTTTAAGAGGAATTCCTTATGTGGGAATAATGAAAATGTAGATGTCAAGTGGCCTATTTTCTGATTGGTGGTGATTAAATTAGGACTAGCTCATTTATGGTTTTAGCCTACAAGTTCTTTGGTAAGTATATTCTTTTGTTTAATAGTTGTTAATAACATTCTCATTACAATGAAG
Seq C2 exon
GTTCGAGTAGTTGGAGTTACCTGTGCAGCCTGCCCATTCCCATGCATGAATGATCTCAAATTCCCTGTGGTTGTCCTGGATGAGTGTAGTCAAATGACAGAACCGGCTTCTCTCCTTCCCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(20.9=100)
A:
NA
C2:
PF130861=AAA_11=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGCTGGCTCAGAAAATGA
R:
GCAATGGGAAGGAGAGAAGCC
Band lengths:
271-1850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]