RnoINT0168985 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231932621-231938624:+
Coord C1 exon
chr2:231932621-231932768
Coord A exon
chr2:231932769-231938496
Coord C2 exon
chr2:231938497-231938624
Length
5728 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTCTTCTTTCTAATGAAGGCT
3' ss Score
7.09
Exon sequences
Seq C1 exon
CTTACATGCTAGCTCAGACAATGAAAGCGAACAATTAAAGGAACTCCACGCACTGATGAGGGAAGAACTGACTCCAATAGAAAGAGTTTATGTCAGGAAAAGTATTGAGCAGCATAAACTGGGGACCAACAGAGTCCTGCTAAAGCAG
Seq A exon
GTGAGGTGAAATCACACCAGTTCCTTCCCGGTGTGTATGTTCTGTTCAGATGCTCTTCGTCTGTGGTGATGGATGAGCTGAGACTTCAACGTGCATCCTTACCAACTCTACCCACTGCGTATTATATTTGCTGCAAACATTCTTCAAGTTGTGGCTGTTGGCTTTCATCAGCCTGTGCAGATCTTGTTTGCAGGACCTGGGATCTGAGGACCTGAGAGAATGGGCGGACTAGAGTCTAATAGTCTTGCTTCAGTCTCAGTGTACCTGTATTTACGAACGAAAGCGGTGATCCAAGGAAGGCTGTTTGAGTTCAGAAAAAGCATGATTAGAAAAACATGTACACAAACACCAGTAAACACATATAAAATTAACAGAGCAGCCCTTTACCAGAACGTTCTTAGGACAGACAAATTTAAACACAACTGCCTGACATGAACTGTAGATTCTATGTGGAAAAACATGTAAGCAAGGCAGAAGCCTTATCTAGAGTGAGGGTGTGGGTATCAGACTGAGTTCTATAGCTGTATTCTGACATCCAATAGTAAACATATCTTATAAATTGAATGTAAGTGTCACAGGAGGCATGAAATTACATCCAAGAACAATTCTGGGAACAATGCACCTGAGGTAAAAGACCCTCTCTTTTTTTTCCTGGAACCTCTGTCACTGTTCCCCAAGGCATTGCTCACCATGGTCATTCTTTTGACTGTGTCCCGACAGTGATGGACACATTTTATTACCATGCCTGCAGCCTTCTTTCTTCTCCCTTTACATAGAGGCTCGAAGAAGAAAATGGAGAACTTTGAATAGATTCTTGGTAAAACCCGTAAAATTAGTTGGATTCTAAGAGAAAGAAAGAGAAAAAGTTTTTATTTTGGGTGAAATATCAGAGTGAAAATTTGTCTTTGGTGCTGCTGTAGAAAGCCAGGTGTCTCAGCGTCTGTCTGCGCCCAAGAATACAGGCAGCGCTCCACTCCCTCCTGGCACTGGGTGCTAGGTGCCCAGATGGTAATAGGAAGTACTGTCCCTTGGTGAAGGGGACAATTCAGAAGCTTTGTCTTATGCAAAGGAACAGTAGTGAAGGAAGAAGAGTCACGGGCTCCCTTGGACTGCACGGACACTGGTCAGTTTCTGCAGGTATTTTGGGAAGCCGGCTTGCGTGAGACCTTGTCCTGGTCAGCTGTTGCTGAAATGAGGCTACTGAGTACAGACGCTCAGGGCAGCCTCTGACTGTCAGCAGCTGTTGCTCAGCGTAGACTGTAAGCCAGTCTGGTCTCAGGGCACCCACCCACCACATACTCAGAATACTTGAACACAGGAGGGCAGGCTAGACCTTTAAAGTTCATGCTCTGCCCCCTAAGATTCCCTTTGCTCTGACTCATCAGGTATGTGGCCAAGCCCACATTCATGAGGCAAGGAGACATTCTCCACCTGCCTCTGGTGGTAAGCACTGTAAAGTCACGTTGCAAGTCGGGTGGATAGTCAGACAAACTTTACAGGGAAAGGAAACCTAATGACGAGTATGTGATGATTTACATTCTAGAAGACCTCGAGATACTGTTTTTGTTTTGTTATAGAGTCTTACTTTGTCGCCCTGGCTGACCTGGAACTCACAGAAATCACTTGTCTCTCTGCTTCCATAGTGCTGGGTTGAATGACATTGGTTAAAAATGCTCAGCTAGAAGTCCTCAGAGCCCTTGAGACTAACTTTCTAGGATCAGAGTTGTAAAGCTTGCTCTGGGCTGCCCCTCCTCAACTAAGGGCCGAATTCGGTTGTTTTCAACAAATACCAATGCCATTTATGTAAACTACTCAACCTGCTATAATAATATATAAGAATAGCTGCTGATATTTTTGACTATTTTTAATCAGAACCCAGTTCCAATAAACATTACCTATCAACAAATAAAAATATATTAACAGGAAAAAAATACTTTTAAAAATTTTTAAATTTACTTTTAATAATACTTTTTAAATTTTCCTCAGTGTCCAGACTTTACAATAAACTTTTAAAAATGGTTTATAGTTACTGCTTCCTAGTCAATAAATAATAAAATATCTTCTATTATTTGACTCTCAGCAGTATAATAAAGAATTAAAAGGTAAAAATAGTTGGTCATGTTAGCAATGCCTTACATGGGAGGCAGAGTCTGGTGAATCTCTGTAATTTCAAGCCCAGCCTGGTCAACAGACTGAGACTAGTACAGTCAGAGCTACATAGAGAGTCTCCTGAGAGGCTCTGCCAAAGCCTTACAAATACAGATGTGGATGCTCACAGCCAACCATCGGACTAAGAACGGGGTCCCCAATGGAGGAGTTAGAGAAAGGACTAAAGGAACTGAAGGGTTTGCAACCCCATAGGAAGAACAGTAATATCAATCAAGCAGAGCTCCCAGAGACTAAACCACCAACCAAAGAATACACATGGACAGACCCATGGCTCCATCTACATATGTAGCAGAGGATGGCCTTGTCAGGTGTCAATGAGAGGAGAGGCCCTTGGCCCTGTGAATGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGCAGGAAGATGGGGGGGAGTCGGTGGGAATACTCTCATAGAGGCAAGGGGAGGGAGAAAGAGATGGGAAACTCCAGAGGGGAAAGCAGGAAATGTAAGTAAAGAAAATATCCGGGCTGGAGAGATGGCTCTATGGGCTGGAGAGATGGCTCAGCGGTTACGAGCACTGACTGCTCTTCTAGGGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCGGATGCCCTCTTCTGGTGTGTCCGAAGACAGTGACTTATATATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAAGAAAATATCCAATTGAGGCAGACAGACTGTGTCCCAAACAACAATAAAAAGCTAAAACTAATATAATTCTTTAATGGAAAAACTTTATCCTTTAATTTTTAAAAAATGCTTATTGATTTATAAATTTAAGATTTTCCTTCTAAAATTGCTTTTATCAGATATAGTTTCCAGAAATAAAAGAATAAATGCTATTTAAGAGTTGTACTAAGAGATATGAACTAAGAGATAAGCTATAAGGATTAGGATCTACTTTTAAATAACTAAATGCTTCAAGTTCAACCCCCAAAAGTTCAACCCTTTTTGGGATTTTCAAGACAAAGTAAGTGGCTTTCAGCTAAAACAATTTTCTTTTTCAGTTTCTATGTGTGGGTGGTGACTGTGGATATGTGGATGCCTGCAGAGAACAGAGGAGAGTTGACCCTCGGAGCTGGAGGCCCAGGAGTTTGTTAGCCCCCAGTGTGGGTCAGGGAACTGAGCTCAGGTCCTCAGGAGAAACTGCAGGTGCCTAGAGCCATTCCAGCTCCCGGATCTCTCTTTTAAAGTCACATTTTTTCCTTTTTTTTTTTTTTCATTTTATAGACAGGCTTTCTCTATGTAACCCTGGAACTTGCTGTGTAGACCAGGTTGGCCTCAAATTCACAGAGATTCACCCGCTTTTGCCTAAGTGAAGGGATTAAAGGCGTGCTAACACATCTGGTCTTTTTTAAAGTCGTGTGTGTGTCTGTGTGCGTGTGTGCGTGCGTGTGTGTGCGTGCGTGTGTGTGCATGTGTGTGTGTTGTGTGCGTGTGTGTGTGTGTGCGCGTGCGTGTGTGTGTGTGCGCGCGTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGCGCGCGCGCGCGTGTGTGTGCGTGTGTGTGTGCATGTGTGTGTTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTAGAGGTCAGAAGACAGCTTGCAGTGGCTCTCTCCTTCCTCCATGTTGGTTGTGAGTACACTCCGGTGATAGTTTAATAAAAGAATGGAAGCCTAACTGACAGAGAGCCACTGTACATGATGAATGTTAAGAAAATAATGCTTATAATTTCCTTGGGCTCTGTGGTGAAAGAGACAGTCGAGAGTCCTGGTTTTGTCATTTGGGCTTGTTGAAAAAATCATTTGGTGTTGAATATTCTGAACGCATGCATACAATAACATACATACTGAGCAGGTTGTCCTTGTGTATTTAAGAATACACACATACGAGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAGAATACACACATACATGCATACACACATACACACACACACATGCACACACACATACCCCACCACTATCAGCAACAACAAAGCAATAACAGTGAATGAAAAGAAGGCTGTGAAGTTGAAAGAGAACAAGGACAGGTACATGACATGACAGGCTTGGAAGAAGGAACAGGAGGGGTAATGATGTAATTATATAAAAAAATTCTTTTAAAGATTTATTTATGCGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCAATCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAAAAAAAAAGAAAAAAAAAGATTTATTTATATATTTCATGTATATGGGTGTTTTGTCTGCATGTATGTCTGGACACCAGAAGAGGACATAGGATCCCATGGGACTATAGTTATAGATGGTTGTGAATTACCATGTATGTGTTGGGAATTGAATCTCCAGAAGAACAAACAGCCAGTGCTCCTAACTGCTGAGCCACCTCTCTAGCCTTAATAGAAATAATCTTTAAAAAAAGAGAGACCATCTGTTCATATGGTCTTACTGTCAGGTGTCATTATGCTGCAGGTTAGGAAGGGACATGACTATATATATATAAACATATCATTGATATGGTATACATGTGTGTAGCTCAAGATACTAGACCAGTCACCATACCTAAGCCTTAAAATTCATAGATTTTTCTATTATGTATATTTATATAATAATTAAACATTGGCCTTTCAAGCTTTATGCCTTGAACACAATGATATTTTAATATATTACTTAAGGTTTGAACAATTCAAATACACTAAAGCATAAAAGTACATTTGAAATTCTATTTTATTGGCATTAGGGACTCACTGTGTAGCTCACATTGCCCTGGAATTCCTGATCCTCTTGCCTCAAGCTCCCAAGTCCTGGAGTTATAGACATGCCCTACTTTGGACAGGTTCTTAAGCAATCACAGAGCCACAGTGTTCAGGGGTTAAGCAAAAGATGGCTTCTTAGCATGTTCTTCCTGGGAAACTTAGGTCAGTGTTGATAAAACGGTTCCGTTCATTCAGGCTCACCTGTAGAGGAGAAAGGAAGACACGTCACCCTTGACGCTTTCTGTACTAGTGCACTAGTACGTCCCTTCTGCTGTAATACCGCAGTGACAGGCTCTTGCTAGTGACCTCCGAGCAGCTCGTGTTTGCAGCATCCGCTGTACATGTGGGAGTGAGGAAAAGGTAGCCATAAGCCAACAGTCGACTTATGAGTAGCAGGAGCCAAGATACATTTGGTTTAGCCTTCATGTTCTCTGTTAAATTCTTGACTTTCTTTTAATAGTCGTTGGTTAGTGATATTTTTGCTTGGCCGGGCAAGGTGACCCACAGCTATAATCCCCAAGCTCAGCGGGGAGAGTGAGGCTAAGCACGGGTACAGAGTGGGATATTGTCTCAGAACCCTTTCTTCTTTCTAATGAAG
Seq C2 exon
GCTCGCGTTGTTGGCATCACCTGTGCGGCCTGCCCATTCCCGTGTATGAATGACCTTAAGTTCCCTGTGGTTGTGCTGGATGAGTGCAGTCAAATGACAGAGCCAGCCTCACTCCTTCCTATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(20.9=100)
A:
NA
C2:
PF130861=AAA_11=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]