BtaINT0164607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14213551-14214991:+
Coord C1 exon
chr6:14213551-14213665
Coord A exon
chr6:14213666-14214728
Coord C2 exon
chr6:14214729-14214991
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCACGCTGCCTTTTTACTAGGTC
3' ss Score
8.17
Exon sequences
Seq C1 exon
CAGTGGTCCACGCCTTATTGGTTTGTAATGCCAGCACAGAGCTGACCACTTTAAAAAATATTCGGGACTGCTTTAATCCAGCTACTCTACCTCTAACACAGTACCTCTTAACAAT
Seq A exon
GTAAGTCATTATTTACCTTTGGGTCATTGGTATTCAAAAATGGTGACTAATCATGAAAATGAAAATGGAGTAAAAGTACATTACACAAATTTTTGCCAATGAAGTGTTAATTTTCTTTGGGGGATTATGGGTTTCCTCCTCATTAGTAATTAAAAAGAGAAAGGGGAGGTACACATCATTTCCCAACAGTTCCTCTATTTATTTATTTATTGTGGCTGGGGCTAACAAGGATACTGCAGATATTTTTCCTTTTTTACGGAATAATTTATTAAGGATCTTTTGAGTGTTTTTACTTTTTTATTTATCTGTACTTTTATGTTGCAAATTATTAAACATTTAAAATTATGTAACATTTTACAGCTTTAATATAGTATGGTATTGATACTGATCTTATTCTTGACATAACCTATATCTTCATTTTTAATTTGTCAACTACCTTGTCCCTTTCTTTAAAAAACTGGAAGTGACATGTTGAATTCACTGTAAAGTGATAGAAAAAGTCTACATTCTAATTTGGATTGTTATGATCTAACTTGTGGTATTTCATTTTTTTCACCATAATGAAGTCCTAGGTAAAAAAGTAAATATTCTTATCCATTATGTCATTTATCTACTTTGAAATGAATTCAGTCTTAATAGAAATAAAACCAGTTTATTTCCATTTTACCTTAAATGGAAGCTATATTAATTGTCTAAGTTGATTTTGTTTAACAGAACATGGGCTTTAAAGTCAGCTTATACACTTATTAACTGTGTGCTTTTGGGGGAATAAAAGGTTAATATTTCTATATCTCTATATGGGATAATTAAGTACTTAGTATTGTGAAGATTACATCAAGTAATATAAAATGCTTAGCATGATGCCAGCATATAGTAGGTTTTCAACAAATGTTCTGTTTTCATCCACCTTCCTCCAAACTGGGGTATATGTTCATTTATGTCTCCAAAAAAATATTCTCTGTGATGCTTATTAAGTGAAGGCTAAGTTACAAATAGGTCTACTTACCTGTTTCAAAAGCCTTTTATTTAAAAAAAAATCTTTTTCACGCTGCCTTTTTACTAG
Seq C2 exon
GTCTTCATCAACTACAACGAGCAACAAGAGAGTCAATAAGAGAAAGTTTATCCCACCAGCCTTCTCAAATATCAACACAAAATTTGAACTACTCAGTATAGAAGCAACATTGAAGTTGGCTAGTGAGTTAATTCAGGTGCACAAGTTAAACAAGGATCAAGCCGCAGCTCTAATTCAGATAGCTCAAATGATGGCATCACGCCAGAGTGTCGAAGAAGCGAAGGAACTGGCAATTCATACCCTCCCTATCACGATCATACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(17.1=44.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCACGCCTTATTGGTT
R:
TGCCAGTTCCTTCGCTTCTTC
Band lengths:
345-1408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]