MmuINT0003941 @ mm10
Intron Retention
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127598701-127601239:+
Coord C1 exon
chr3:127598701-127598815
Coord A exon
chr3:127598816-127600979
Coord C2 exon
chr3:127600980-127601239
Length
2164 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTGATGTTCTTTTTTACTAGGTC
3' ss Score
10.14
Exon sequences
Seq C1 exon
TCACAGTCCATGCATTGTTGGTTTGTAATGCCAGCACAGAGCTGACAACTCTACAGAACATTCAGGACTACTTTAACCCAGCTGCTCTTCCACTAATGCCATACCTGCTAGCAAT
Seq A exon
GTAAGTCATTTTTAATCTCTGTGTCATTGATATTATATTATGGAGGCCTAGCTTCTTTCTATTGTTTGATAAACACTATAGTCAGAAGCAACTTAGGATGAAAGGCTTATTTCATCTTAGAGCTTAGAGTTTATCTCTAAGGGAACTTGGTGCAGAAACCTGGAGGCAAGACCTGAAGTAGAGACCGACCATGGAGGAGCACAGCTTACTGGCCTGCTCAGTCTGCTTTTTTTATGCAACCCCTTGCCTAAGGGTTGCACCACCTACCGTGGGCTGAACCCTCCCACATCAATATGCCCCACAGACTTTCCCATGGGCCATTGGTAGAGACATTTTCTTAACTGAGGTTCCCTCTTCTCAGATGCCAACTTTTATCAAGCTAGCAAAAAATTTATCAGCTCAAGTGGTAACGGAAAGTACAATATCAGAATATTAAATACATTTACCAACAAAACTTTAATTATCTTTTAAATTTGGAGATTACTATATACTAGAAATCAAGCATAAAACAGATGTGGCTCAATGGTAGAATGCTGTGAGCATGTGTGAGGCTCTGCTTTGATCCTCTGCACCAAAAATAAATAAATAACATTTATAGAAGGGAAGAAAGCTATATGTATTACTTTCCTTTTCACCAGTTTATTTGTTGTCATTCACCAGTTCTGACCAGTTCTGAAATTAATTCATTTTATTGAGGGAAGGGGGTACCTTTTAAAAGGGTCATTACAGTATCTTCTTTTAAATAATCTACTGTGTTATAGAACACTCTCTTCTAAAAAAAAAGTTTATTTATTTATGGTTTTGTTTTTTAATGTATGAATGCTCTTTCTGAATGTACTACTGTATGCCAGAAGAGGGCATCAGATTCCTTTATTAGGTGGTCACGGACCACCATGTAATTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAACTAGCACTCTTAACTGCTGAGCCATCTCTCCAGCCTCATTGTGCAAAATTTCATTCATTTGTATGGATTTTTACATGTATGGGTGTTCAGCCTGCATGTGTGTATGTTCATCATTTGTGTGTCTGGCATCTGGGAGGCCAGAAAGGTTATTGGATTCCCTGGAAGTGTTATTACAGCCATATGTGAGCTGTCATGTGGGCTCTAGGATAGAATCTGGGTGTCCCGAAAGTGCAACCAGTGCTTTTACCTGGCCTGCTCTCTCTCCAGCCCCTTATCTGTATCTTAATGCTGCATAATACTTAACATTCAAAAGAATGATTTTACAGTGTAGATGTTGATACTATTTTCATTCTAATTACCTGCATTTCACTTTAAAATTTTTCTAACACCAAAGCTCCTTTTTAAAATATAAGAAATGGGGCTAGGCTACAGCTCACTCTATCACATCCACAAGGCCCTTGGTTACATCTCCAGTACCAGGTTAACCAACTGTGGTAATAAACTCCTGTAGTCTTAGCACTGTGGAGGTGGGACAGGAGAATCAAATTCTAATTCATCTTCAGCTACTTAGAGAGTTCCAGGTTAACCCGGCATACATGAACATCCTGTCTTACTAAGTCAATGAATGAATTAAAATAACTGGGAAGTGGATTTATACTTAATCCATTAAAATGAGAAAAGTGTGGTATTTTTGCACTGGGCATTGAATCCCATTCATGCTAAACAAGTCCTCTCCCACTGAGTGACCTTTCCAGCTCCTACCTTCCAATTTGGATATCAGTCTTGCAGCATTACCCTTTTCTTTGCCACAATGAAACTCTAGTTATTTTATTTAAAAAAGCCTATTAACTTCATTTTTTATATATTTTAAATAACAGTAAAATCCATTTGCCTATTGTAAGTTTACCTGAAGTATCAGCTATGTTAATTATCTAAAGCCTACTACCTGTTAGTACCATGAATTTGTGGGAACATTTCAGTATTTATATATCTATTTGTGGTGACTGGGGTGTCCTATAAAAAATTAATTTGTAAATTACTTAAACTCATGCCATGGATAGTGGGTATTTTGTAAATATTAGTTCTCTTGCACCCTCCAGAGTGAAGCCTATCCATTTGTTACCTCCAATTTTTTTTCCTGAGGATTGTAAAGTGAAAGCTAACTCATGAATAAGTCCACTCACACATTTCACAATTCCTAACTGTTTCTGATGTTCTTTTTTACTAG
Seq C2 exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATATCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAAACGGAACTCCACCTTGGAGCGACCCTGCAGTTAGCTAGGGAGTTGATTAACGTACACAGGTTGAACAAGGACCAAGCTACAGCACTAATTCAGATAGCTCAAATGATGGCATCCCAAGGAAGTGATGAAGATGCCCTGGAGCCCTTCGGCCATTCCCTGCCTATCACAGTCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278:ENSMUST00000196141:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(17.1=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types