RnoINT0168981 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231922955-231925876:+
Coord C1 exon
chr2:231922955-231923069
Coord A exon
chr2:231923070-231925613
Coord C2 exon
chr2:231925614-231925876
Length
2544 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCTAATGTTCTTTTTACTAGGTC
3' ss Score
9.62
Exon sequences
Seq C1 exon
TAACGGTCCATGCATTATTGGTTTGTAATGTCAGCACAGAGCTGACAATGCTGCAAAACATTCAGGACTACTTTAACCCAGCGACTCTTCCACTAATGCCATACCTGTTAGCAAT
Seq A exon
GTAAGTCTTTTACCTTTGCAGTATTGATATTATGGCGGCCTAGTTCCTTTCTATTGTTTGATAAAGACTATAATCAGAAACAACTTGGGAGGAAAAGGTTTGTTTCACCTTACAGCTTAGATAGAGTCTTATCTCAAAGGGAACTTGGTACAGAAACTTGGAGGTAAGAACTGAAGCACAGACCATGGAGGAACACTGCTTACTGGCTTGCTCAGTCTGCTTCTTTATGCAAACTAGAACCCCTTGCCTAGGGTTTGTACCACCTACAGTAGGCTGGACCCTCCCATATCAATAATTAATCAAGAAAGTGCCCCATAGACTTTCTATGGACCAATGTGATAGAGACATTTTTTTTTAAAGATTCATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCCAGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTGGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAGAGCAGTCAGTGCTCTTAACCACTGAGCTCTCTCTCCAGCCCCCAAGACATTTTCTTAATTGAGGTTCCCTCTTCTCAGATGCTAACTTGTATCAAGCTAACAAAAAATTTATCAGCTCAAATGTTAACTGAAAGTGCAATAACAGAATATTAAATATATTTTTACCAACAAAATTTTAATTATCTTTTACATTTGGAGATTATATTTGTATATTAGAAGTTAAGCATAAAACAGATGTGGCTCAATGGTAGAATGCTGTGAGCATGTGTGAGGCTCTGGTTTGATCTCCAGCACCAAAGATAAATAAATAAATGACATTTATAAAAGGAAAGAAAAAATATATATGCATTACTTCCTTTTCATCGGTTTATTTGTTACCATTCAGGCCAGTTCTGAAATTAATTCCTTTTATTGAGGACTTTTAAAAGATCATTATAGTACCTTTTTTTAAATCTTTTGTCATTGTTGTTTTTTAATGTGTAAGTGCTCTGTCTGCATGTGCTACTGCATGCCAGAAGAGGGCATCAGATTCCTCTATAGATGATCATGAACCACTCTGTAATTACTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGCCAGTGCTCTTAATTGCTGAGCCATCTCTCCAGCCTCATTGTGCAACATTTCATTCATCTGTATGTTTTTTCCTGTGTGGGTGTTCAGCCTGCATGTATGACTGTTCGTCATTTGTGTGTCTGGCATCTGGGGAGGCCAGCAAGGATACTGGATCTCTGGAAGTGTTGCTGCAGTCAGTTGTGAGCTGCTATGTGGGCTCTGGGAATAGAGTCTGGGTGCTTCGGAAGAACAGCCAGTACTTTTACCTGCCTTCTCTCTAGCCCCTTATCTGTATCTTAATGCTGCACATCACTTAACATTCAAAAGAATGATTTTATGATGTCCATGTTGACACTATATTTATTCTTATTACCTATATCTCATTTTTAAATTTTTCTAACACCAAAGCTCTTTTTAAAAAAGTGAGAAATGGGGCTAGGCTACAGCTCATTCTGTCACATCCACGAGGCCCTAGATTACATCTCCATTACCACACTAACCTCCTGTGGTAATATACACCTGTAGTCTCAACACTTCAGAGATGGAGAGGAGAATCATGACTTCTTTTCTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTCTATCACTGAGCTAAATCCCCAACCCCGAGAATCATGACTTTTAATTCATCTTCAGCTACTTAGAAAGTTCCAGGTTAACCTGGCATACATGAGACATGTTGTCTGAATGAATGAATTAAAATAACTGGGAAGTGAATTTATACTTAATATATTAAAATGAGAAAAGCATGCTTCCTTGCACTGGACATTGAACTCCATTCATGCTAAACAAGTGTTCCACCACTGAGCTATCTTCCCGGCTCCTCCCTTCCACTTTGGATCTCTATCTTGCAGCATTACCCTTTTCTTTGCCACAACAAAACCCTAGGGGTTTTTTAAGCCTTGTAGCTTCATTTTTATATATTTTAAATAACAATAAAATCCATTTGCCTATTGTAGGTTTGCCTGAAGTATAAGCTATGTTAATTATCTAAAGATTACTACCTATTAGTACCATGAATTTGTGGGCACATTTCAATATTTATATATCTCTATTTGGGGTAACTCTTTTTTGGTGTAAAGAGTATATAAATTAATGTGTAAACTACTTAAACTCATGGCAGCAGACAGTGGGTATTTTGTAAATATTAGTTCACTTGCACCCTCCAGAGTAAAGCCTATCCATTTGTTACCTCCAATTTTGTTTTCTGAGGATTGTGAAATGAGAGCTAAGTTATAAATAAGACCACTCACACATTTCAAAAGTCCTAACTGTTTCTAATGTTCTTTTTACTAG
Seq C2 exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATGTCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAATTTGAACTCCTCCACTTGGGAGCAACCTTGCAGTTGGCCAGAGAGTTGATTAACGTGCACCGGTTGAACAACGACCAAGCTTCAGCACTAATGCAGATAGCTCAGATGATGGCATCCCGAGGCAGCGATGAAGATGCACTGGAGCCCTTCAGCCATTCCCTGCCTATCACAGTCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(17.1=44.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]