BtaINT0164631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011162 | ZKSCAN2
Description
Bos taurus zinc finger with KRAB and SCAN domains 2 (ZKSCAN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205670]
Coordinates
chr25:23099759-23100306:-
Coord C1 exon
chr25:23100215-23100306
Coord A exon
chr25:23099886-23100214
Coord C2 exon
chr25:23099759-23099885
Length
329 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTACTCTTAGTGTGTTACAGGGA
3' ss Score
5.28
Exon sequences
Seq C1 exon
CTCGGCCTTCTCCCTGGGTTCCTTCTCCTGCTAATGAATGGAACACCATAGATCAGGAAGTAACAGCCACTCCAGTTCCTGTCCGGTCCCAG
Seq A exon
GTAAATTGTAACAGTTCTCTCTGGCCTAACTTCCTAGGATATTCAGTAACAATGATTTCTTCAAACCTCTGTACCCACTCCAAGAGACTTTTCCCCCATTACTCCTTTTCCAGAAAAGACTGCACGCAGCCTTCTGAGTAATCAGACTCCTTGCTGGATCCTTTCTCTTATGATTCTTTATAGTACCTTCGCTTCATTTGGCACATAATGTATACTTGGTTCTTTGATTTCAGTTTTTATCTAGGGCTTTCCTATCCTTCATCCATGATCATTCATCCTTCAGAACCTGTGTGGTTATCTTGGTAGTCATTACTCTTAGTGTGTTACAG
Seq C2 exon
GGACCAGTGAAAGATGTCCACATGGCAAGAGGTTTTTCCTACAAAAAGAGTGTGCATCAGATTCCTGCTCACAAAGACCTCTACCGGGATATTAGAAAGGAGAGTGTTGGGAACATGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011162:ENSBTAT00000014826:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCCTTCTCCCTGGG
R:
GGAGACCATGTTCCCAACACT
Band lengths:
215-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]