HsaINT0185862 @ hg19
Intron Retention
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677]
Coordinates
chr16:25263230-25264358:-
Coord C1 exon
chr16:25264267-25264358
Coord A exon
chr16:25263357-25264266
Coord C2 exon
chr16:25263230-25263356
Length
910 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TGGTGTTAGTGTCATTACAGGAA
3' ss Score
2.24
Exon sequences
Seq C1 exon
CTCGGCCTTCTCCCTGGGTTCCTGCCCTTGCTGATGAATGGAATACCCTAGATCAGGAAGTGACAACCACACGGCTTCCTGCTGGGTCCCAG
Seq A exon
GTACATTGTAATTGTCTTTTTTTTCTTTGAGATGGAGTCTCACTCTGTCACCCACGGTGGAGTACAGTGGCGCAATCTCAGCTCACTGCAACCACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGTGCATGCCACCACACCTGGCTAAGTTTTAGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGCCTAGGCTGGTCTCAAACTCCTGACTTCAAGTGACCCGCCCGACCCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTACCATGCCCTGCCGTAATTATCTTCTCTGGCCTTCCTTACTAGGGTGTTTAGGCGCAATGCTTTCTGTGCCTTCACTGTCCTCAAATTTTTATACTCCCGTCAAGAGTATAAAAGTGTATTTCCCCCTTAGTCCTTTACTTATACTTACTTTAAATATACTTATACTCCCCACAAGAGTATAAAAGTATATTTCCCCCTATTCCTTTACTTATACTTACTTTAAATATAATTACTTTACTTACCTTAAATATACTCCCCACAAGAGTATATTTCCCCCTTATTCCTTTACTTATACTTACTTTAAATATACTTACTTTACTTACTGTAAATACACTTATAGTCCTCACAAGTGTATAAGTATATTTCCCCCTTATTCCTTTTCCTGAAAAGATGGGACCCAGTCTTCTGAGTAATGAGACTCCTTGCTGGATCATCTTGTTTATCTTGTCATCTTATGATTCTTTCTCTTCTGCTTCATTTGGCGCAAACTATCCACTTGTTCCTTGATTTCAGTTCTTTAGGGTTCTTCTCTGCCTCATCTGTGATTGCTCATCCTTTGAAGACCTGTGCAGTTATCTTGGTAGTCATTGGTGTTAGTGTCATTACAG
Seq C2 exon
GAACCAGTGAAAGATGTCCACGTGGCCAGAGGCTTTTCCTACAGAAAGAGTGTGCATCAGATTCCTGCCCAAAGGGACCTCTACCGGGATTTCAGGAAGGAGAATGTTGGGAACGTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592-ZKSCAN2:NM_001012981:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=53.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCCTTCTCCCTGGG
R:
GGAGACCACGTTCCCAACATT
Band lengths:
215-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)