MmuINT0180351 @ mm10
Intron Retention
Gene
ENSMUSG00000030757 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:MGI Symbol;Acc:MGI:2444060]
Coordinates
chr7:123494806-123495363:-
Coord C1 exon
chr7:123495293-123495363
Coord A exon
chr7:123494933-123495292
Coord C2 exon
chr7:123494806-123494932
Length
360 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TGGTGTTAGTGTTGTTACAGGAA
3' ss Score
3.41
Exon sequences
Seq C1 exon
CTCACTCTTCTGTCTGGGTTCCTGTCCCTAGTGATGAGTGGAATGCTCTCGATGAGGAAGTGACAACCCAG
Seq A exon
GTAATGTACTCCCAGGTGAAGTGTAATTGTCCTCCCTGCCTTCCTTCTAGGGAGTTCAGTCAGGTATTTCCTGTGCTAGCCTACATTGTTTATACTTCTTCCAAGAGACTTTTCCTTCATTTCTTTTGTAGAAGAGGTTGGACTCAGTCGTCTCAGTAACGGAGCACCTTGCTGGATCAGCTCTTTCACTGTCTCATCCTAATTCTTTACTGTATCTTCCTCTTGACTTGATACATGATACACACGTGTTTGCTTAACTCAGTTCTTCTTTAGGGCTCTTCTCTGATTCATCCATGGCTGATCACCCTTCAGAGACCCCTGCAGGTGTCTTGGTAGTCACTGGTGTTAGTGTTGTTACAG
Seq C2 exon
GAACCAATAAGAGATGTCCACACAGAGAGAAGCTTTTCCTACAAAAAAAGTGTACAGCAAGTTCCGGCGCACAGAGGTCTCTACCACGAAATCAGGAAGGAAAGTGCAGGGAGCATGGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030757:ENSMUST00000042470:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCTGTCTGGGTTCCTGT
R:
GGAAACCATGCTCCCTGC
Band lengths:
191-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types