RnoINT0169021 @ rn6
Intron Retention
Gene
ENSRNOG00000024245 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:RGD Symbol;Acc:1359568]
Coordinates
chr1:193454028-193454580:-
Coord C1 exon
chr1:193454510-193454580
Coord A exon
chr1:193454155-193454509
Coord C2 exon
chr1:193454028-193454154
Length
355 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GGGTGTTGGTGTTGTTACAGGAG
3' ss Score
5.51
Exon sequences
Seq C1 exon
CTCACTCTTCTGTCTGGGCTCCTGTCCCTAGTAGTGAGTGGACCGCTGTAGATGAGGAGGCGACAACACAG
Seq A exon
GTGATTTACTCCCAGGTGAATTGTAATTGTCCCCCTGGCCTGCCTTCTGGGGAATTCAGTCAGGTATTTCCTGTGCTAGCCTACATTGTTTATACTTCTGAGAGATTTTTCCCTTCATTCTTTTCCAGAGGACTTTGGACTCTTCTCTCAGTAATGGAACCCCTTGCTGGATCAGCTCTTAGGCTATCTCCTCCTCATTCTTTACTGTAACTTCCTCTTAACTTGATGCATGATACACATGTATTTCCTTTACTCAGTCATGCTTGAGGGCTCCTCTCTGCTTCATTCATGGCTGATCATCCTTCAGAGGCCCTCTCGGTTGTCTTGGCAGTCACGGGTGTTGGTGTTGTTACAG
Seq C2 exon
GAGCCAGTGAGAGATATCCACACGGTGAGAAGCTTTCCCTACAAAAGGAGTGTACAGCAAGTTCCTGCTCACAGAGATCTCTACCATGAAATCAGGAAGGAAAGTGCATGCAGCGTGGTTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024245:ENSRNOT00000020281:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCTTCTGTCTGGGCTCC
R:
AAACCACGCTGCATGCACTTT
Band lengths:
191-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]