BtaINT0164634 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011162 | ZKSCAN2
Description
Bos taurus zinc finger with KRAB and SCAN domains 2 (ZKSCAN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205670]
Coordinates
chr25:23091497-23094240:-
Coord C1 exon
chr25:23093749-23094240
Coord A exon
chr25:23092420-23093748
Coord C2 exon
chr25:23091497-23092419
Length
1329 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TATTGTCTTCTTTTTTTCAGATT
3' ss Score
11.15
Exon sequences
Seq C1 exon
GTGTGCACTGGGGCTACGAGGAAACCAAGACTTTCCTTGACATACTCCATGAGACTCGGTTTTACGAAGCACTGCAAGCCTGTCATCGGAAGAGCAAGTTGTATGGGGCCGTGGCTGAGCAGTTGCGAGAGTGTGGCTTCCTCCGAACTCCGGAACAATGCCGGACCAAGTTCAAAAGCCTTCAGAAGAGCTACCGCAAAGTGAAAAATGGTCACGTGCTAGAGTCCTGCGCATTCTACAAGGAGATGGATGCTCTGATTAACTCTCGGGCATCTGCTGCTCCCACCAGCTCCCCAGAAGAAGCCCCGTCACCCTCAGTTCAAGAAAGAGAGGACATGGAAATTGAACCCCAGGAACCTACAGTCTGGGAACCTGAGGAGGACTCCCAGGAGGTGCTTGTTGAAGACTCTGGCAGTGAGAGAATGAGTGAGGAGGAAATCATGCAAGAACCAGAATTCCAGGGACCTCCATGTTTACTGCAAAGCCCAAGTG
Seq A exon
GTAAGGATCATTGGGGCTCTGGGGTAAAGGAGGAATCAGTGGGATTACTGACAAATTAGGAGAGCTGGCACATCACATGTGCATGTATGTTCATTAAACAGTATTTGTGTGTCCTGTGCCATTTGAGGAGAAGAGTAAAGTAGCAGTGAATAAAACAAGAGTCCCTGTACTCATGGTGCTTCTGTTCAAGGGCAGAGCTTACATTTTCGTGATTTAGTCTTTGGGATCTCAGCCTTGGTTTTTGTGTGTCGGGGGCAGATAATGTTTTATATCTCCTAGAAATACTGTTGGGAAGAACTTGGAATTATATGTGAGAAAAACTCAGGTCAAGGAGACATGTTGGTAAGCTCAGAGCAGAAATTTCTGTTATGTGTGATATGCACAAGAAAAAGGCAGAGACAGAAAGACTTTATTCTGGTTTTGAGCTCCACCTGCGGGTGTCCCACCAACCACTGGATGCCCTCACAGGCATCTCACCAGCAGCCCAGCCTTAAAAGTTTCAAAAGGAATATCAACACCTTCCTTCCCACACTGTGGCTCTTCCTGGTGCCCTCCCATAGCACATCCGACCTGGAAAGCTAGGGATGTTTTTTGATGCCTTCTCTTTTGTTTACATCCAGGCAGATGACATATTTTCTCAACTGTTGGGGAATTTGCATCTGCCCCCTCTTTAGTTGCCATAACCACTAGTTTAACATTTCTCTGTCTCTTGCCTAAACTATTGTAAAAGTCCCCAAACCAGTTTTCCTCATTAGACTTGTGTTAAGCTTCCACAGCCATCCTTAATCTGAGCTTGTCTTTTTAGCCTTACCTGTCATTATTTTCCTTCCTATACTCTATGCTGATTCAAAACAAACGTTTGAAAAGAGAGTTCACACACATGCTCTTTGGTGGTATTTTTATGAGAATTTGTAGTAAGCAAGATGAAATTGTTGATTCTGGAACTGCTGAGTTGATAACTTTGGAAACAAAGTCCTTCTGTACCATCTCTGGTGAACCTTGTATTTTAAGATGAGCTCCAGACCTGTCACCAAATTACCAGGCTCTGTGTAAGCCAACTGCTAGGCTGTAACTTCCTCCAAGGCCCAGATGGACCCAATCAGAACACTTCCAAAGATGACGTGATTAGGGCTTCTCACGTAAGTCAGTGGATTCACTGATGGCTGTCCATGGGACTGAAAGAAAGTAAGGCCCAGTGAGTCAGAAAAGAGTCCCCCTTGCCTGAGGTCAGTGAAGCACACAGAGGCCTTAAGGTACCGGGACTGTCAGCTGTATTATTTATATTAACCCAGAACTGGTCTGAAATTTTTATTGTCTTCTTTTTTTCAG
Seq C2 exon
ATTTTGAAATTGAAAGTAGTATCAAGGAAGATGCAACACAGGTGATCTGTAAGGACATGGAGCAGCATAGGGCATTCATAGAAAAGTCTAAAAGGGTCGTTTCCCAGAATGTTGATCCAGGTAAATATTGTAAAAGAGATTGTGTCTCAGGAGGACAGTGGGAAAACCTTCACGGAATCCGACAGGGAAAACTGATGCCTCAGCCTCGAGATTTGGGGAAAGCCGTAGTGCATCAGAGGCCTCTTGTGGGGAAGAGGCCCTTCCGGCTCCTCAGATACGGAGAAAGCTTTGGAAGGAGTGCGCGTCTCATGTGCCGCATGACCCACCAGAAGGAAAACCCTTCTAAGTGTAGTGTCTGTGGGAAGTGCTTCGGTAGAAGCAGGAGTCTAGTCCGACACCAAAGAATCCACACGGGAGAAAAACCTTTCAAATGTCTCGACTGCGGGAAAAGCTTTAACGACTCCTCCAACTTTGGTGCCCACCAGAGAATTCACACAGGAGAGAAACCCTACAGATGTGGAGAGTGTGGGAAATGCTTCAGCCAGAGCTCAAGTCTCATTATACACCAGAGAACCCACACTGGAGAGAAGCCCTACCAGTGCGGAGACTGCGGGAGGAGCTTCACCAACAGTTCGCACTTCAGCGCCCACCGGAGAGTCCACACCGGCGAGAATCCCTACAAGTGTGTGGACTGTGAGAAAAGTTTCAATAACTGCACGCGATTTCGTGAGCACCGGCGAGTGCACAGCGGGGAGAAGCCCTACGGGTGCAGCCAGTGTGGCAGACGTTTCAGCAAGAGTTCTGTGCTCACCAAACATCGGGAGGTTCACGTAAGAGAAAAGCTGCTGCCGCCCCCGCCAGCATTCTGCTCCCCGGAGAACCCCCTCAAGGGCAAGACTGATGACTTCAGGCAGACTTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011162:ENSBTAT00000014826:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGAGGTGCTTGTTGAAG
R:
CACAAGAGGCCTCTGATGCAC
Band lengths:
356-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]