RnoINT0169024 @ rn6
Intron Retention
Gene
ENSRNOG00000024245 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:RGD Symbol;Acc:1359568]
Coordinates
chr1:193437614-193444374:-
Coord C1 exon
chr1:193443883-193444374
Coord A exon
chr1:193441896-193443882
Coord C2 exon
chr1:193437614-193441895
Length
1987 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ATTGTCTTTTTCTTTTCCAGATT
3' ss Score
12.33
Exon sequences
Seq C1 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACCTTTCTTGATATCCTTCAAGAGACACGATTTTATGAAGCACTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGAGTTGTGGCTGAACAACTTCGAGAGTGTGGCTTTCTGCGAACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTCCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCTTTTTACAAGGAGATGGATGCCCTGGTGAACTGCCGTACAGCTGCCCTTCCCACCAACACCTCAGAAGAAATCCCATCACTCTCAAGGCAAGAAAGGGGACATATTGAGGTTGAACCCCAAGAGCCTACAACCTGGGAACCTGAGGAGAGCTCACAGGAGGCGGTGTTAGAAGATTCTGGCAGTGAGAGAATGAGTGAGGAGGAAATTACAGAAGAGCCAGAATTCGAAGGATCTGCAGGCCTGCCGCAGAGCCCAACTG
Seq A exon
GTAAGGCCCATGGGGCTTCTGGACAAAGTGAGGAGAAAGTGTGGCTTCCTGAAACCAGTACACCTGGCACATGGCTCGTGTACATGTATTCGCTCAGAAGATATTTGAGTGCTCTTTGCTGTTTAGAGGAAAACGGAGTAGAATTAAGTAAAAGGTCCTGTTCTCATGGCACTTCCCGGGGGAAGGGGGCTCAGCTGCTCACATTCTGATGGTCCTGACTTGAGGACTTTAGCTTTGGTTTCTGTCTTGATGGGTCACACAGTGTTTTGTTTCTGGAAAAACTAGAGAAGAATGTGAGATTCTACATTTTAAAAGAAATACTTGAAGGAGGAGGAAGGTCAGGAAGCTCCATCAGAACCATCTCTGCCGTGTGTGGTGCGATGAGGAAAGGGACAGGCAGGGACACGGTGAGAGGCTTCATACATCAGCAGCTTGCTTGCCGTGGCCCAGCGGTGTGCTTGTTGGCAGCTAAACTGCTAGCTCAAGCACGGTCGGCCGGCACGGTCAGCCGTACCTAAAACCCTCGGTGTCCTTTAAAGAGCATTTGAATGCCTCCACCTCAGCGTTTACACCCGGGCAGGGGACATGGCTTACTAAGACTCACCTCTGCCTGCCCACTTCCACTGCCATAGCCACTGTTCTAGTTCTTCTGTCTTTCTCTGTCCCTTGCCTAGGCTGGAAAGTCTCAAAACCAAATTTTCTTACCTGTACTTTGTTTTTAGAGAAAGAGGCCCCAGCTGAGGCCCAGGCTGGCCTGGAACTCACGATCCTCCCGCCATAGCACCTGTGCTCTGGGATTGCAGGCATGTGCCATCCTGCCCCACTTCTCACCCGTGTTTTGTTAAGCCGTACTTAATCTGTGCCCATCCTACCCTTCAAGGCGTGTATGCGACTATTTCATTTCTCTAGGCTTACTTTGAAACAAAACTCCTTGCTGTGTTCTACCTGCCCCTTAGGCTCTCTCACATCTAAGCTGTGGCTCAACATCCCTGCCAAACTCCGCACCTTGAACAAATTCGGCTGTATACATCTGTGGGCGTTTTTCCTGCATGCATGTCTCTGTAACATGTACATGTCTGCTGCTACCCACAGAGCTGCATTGAGCCTAAGATACTCAGCTTTTGGAATGTTTGTGGATGGCAATAATGTGTCTTTTAGAATTTGCATCAAGGTAGTCTGGTAGAGAGCAGGGAGTGTGTGAACAGAGGTGAAACTGCATTGGTCATAATATGGATCATTGGTAAAGGTAAGTGAGTAGTTCATGGCAGTTCCTGATACATACTACACCGTTTATTCTTCTCTGCCTATGAGTTTCCCATAATTAAAAATTGAGAACAAAAACACGATTAACAAGTGGCTAGGGTGTTGCCAGAACCAAACTACATCATTACAAAGTTTCTGTCTCCATAGGGCATATATCATGTTTCCCATAAGACTCCACAGAGAAGCAGAATCCAAGATCACCTTACAGTGAGTGGGGGATAATGGAAGAGTAAAATTCTAGCTTTGGAAACACTAAAGCAGTGTATTATTGTGATCTATGAGGTGACCAAAAAACAAGCTACAAGATGGTATGAGAAAAATAGTACTCTAAGCTAGAACCTGACTAGTTATTGCCCAATTGAGAAGTATCCTGAGGAATTTAGAGTTGCCCGTTAGAGTTTATTTAAATGAAGTCTAGTACTATATTTAGTATAGCTATGACAAAAGAAAAACAAAATGAGCTACTTGAAGGAGATAAACCAGGCTGTTGCTAAGTTAATCAGGATGCATATGGAGACTGGTATCTTGATATACAATCCAGTTCAAAAAATGTGAGGCCCCACAGCTTAGCAAATGCCATTGGCCTTTGTAAAGAAATGAGAGAGGGTAAAGCATGGTTGATCAGTCAGGTCATGGTGTGAGGCCATAAGCATTGGAGGCCTAGTTAACTATTTTTCTTAATGTTGGAATTTTGTGAAATTCTTATTGTCTTTTTCTTTTCCAG
Seq C2 exon
ATTTTGAAATCGGAAATATTATTAAGGAAGCCCCAACACAGGTAATATTTAAGGACACAGAGTCCCATAGAGCATTAATAGAAAAGCCTAAAAGATTTGTTTCCCAGAATACCAACCCCAGTAAATACGGTAAAAGGGAGTGCTTTTCAGGAAGACACTGGGAAAACCTTCAAGGAGTTAGACAGGGAAAACTGATGTCTCAACCTAGAGATACAGGGAAGGCTGTGGTGCATCAGAGGCCTTTTGTGGGAAGGAGACCATACAGACTTCTCAAATATGGAGAAAACTTTGGAAGGAGTGCCCGCCTTGTGTGCAGGATGACCCACCAGAAGGAGAATCCTTATAAGTGTGGTGTCTGTGGAAAGTGTTTTGGTAGGAGCAGGAGCCTAATCAGACACCAAAGAATCCACACTGGGGAAAAACCTTTCAAATGTCTTGATTGTGGAAAAAGCTTTAATGACTCCTCAAATTTTGGAGCCCACCTGAGAATCCACACTGGAGAGAAGCCGTACAGATGCAGGGAGTGTGGGAAATGCTTCAGTCAGAGCTCAAGTCTTATCATCCATCAGAGAACCCACACAGGTGAGAAGCCCTATCAGTGTGAAGAGTGTGGGAAAAGCTTCACCAACAGTTCTCACTTCAGTGCCCACCGCAGAGCCCATACTGGAGAGAATCCCTACAAATGTGGGGATTGTGAGAAGAGCTTCAATAACTGCACAAGGTTTCGAGAACACCGGCGAATCCACACTGGAGAGAAGCCCTACACGTGTGCCCAGTGTGGCAAACATTTCAATAAGAGCTCTTTCCTCACCAAACACCGGGAAATCCACATTCGAGAAAAGCCGCTGCCATACTCCCCTTCTGTGTACTCCCCAGAGAACCTACTGAAAGCCAGGAGTGCCGAGCTCAGGAAGACCTTTTGACAGTGAGCTTGTCTTTCCACTCGCCCCTTAGCCATCTAATCCTAGTCCCGCTCTTGGAAGCAATCCCTTCTTAGCTGTAAATTACAGTTTCCAAGACAGGCCTGAGAATAGAAATAAACTAAACTTCTCATCTGTTCTCACCTCATAGTCTAACATGCTCAAGCTGCCTCTCTCCAATGAGTCTTGGCAATTTTAATAAATTCAGAATAAATTTCTCACTAGAATGTTGAGGCTAATGCATAAGTTGTCTAGCAACTTTCAAAACTCTTACACATGGTTGAATCCATATATTTTCAAATATATGAATGGTGGAAAATTTTTATGGTGTATCTGTCACCCATATAAGATCTTGGCAGCAACTTGACAATAGATTTTCATGTCTGGGTAGAACTTTTAGGAGTTTAATAAGAACTGTATCAGATCCATCTTGGTTTTGAGGGTACAAAAGGAGAGTGAAAGTTTTATACCTTCCTTCCTCAAGAAGTCTGTATCAAGAAGTTGATCCAAATAGCGAGGGTCTAATTTCCTGTGCTGTTACAGAAATCGCATTGCTAATACCTGTTCTCCACCAGGACGAGCACCTGCTCACCCTTCACCTCCCTTTCTGTTCCTGAGGACTTAACTCCAGTGGCTGCTGCTTCTCCAGTGACAAACGATCCTTGTATATTTATCGCAAGTCTATACTTACCTCTTAATCGTTCTGGGTGCTCTTGTCTGACTCTTCTGGGCTACCTTAACCCATGCAGATGGGAGAGGATGCACACTGGTGCTGTCTCATAAGAGACAGTCAGATTGCAAACTCTAGCTCTACCCATCATTTCTCTGACTCTTAACCTAGAGCAAAACCAGCCAGTATGTTGGCATATTTCAAATAGCTTAGCTCTACATGTCAATGTAATATAATAGTGTTTCTAAAAGTTTAAGGCTGTAAGGAAGAAGATAAGACCTGAAGTATTTAACTGACTCTTTAGGCTTATTTTAGATCGAAGAGCTACCTCAGTCCAGATTACACTTCCAGGGTTAACTGTTACACTACTAGTCTCTGGTTCTGAAGTTTCTAGTTCCTGTTTATAGGATCATAAACCTGACTATAGAGTCCTGAATAATTACACCACTCTATATTTCACTCAGTGGAAGTGAAGTTACTTATAAACTTCCACTCTGCCACCTTATTTTCCCCATTGTCCTATTCTGAAAAAAATAATTGATAATTCCCTGGCATTAACTAGGTATATATTGTCAGAAAGTTTCTGGTGGGGAAATACTCATAGACTTACCGATGAAATTCAGGAATCTGATCTTCCCAAACCAGTTACTTAACATTGGGGCCCGTGGTGTTCATACCTTTAATACATAGGTAACCCCATGTAGCTTTTCTTTGGGGAGGGAGAAGTCCCAAGAATAGTGGAAGGAGAACCATAGTCAGGTGTTTCTAGGTTCTCCTCAGATGCTCTCATTGAAAACATCTAGAGATGATATTTTTATGTGAATATATTTGAGTCTTTTGAGACCTATTCAGCAAAGTATCAAAGAGGGTAGACATTGTAGAAAGAAAAGTGCTTTATGGTGCCAGCGTAGGATATAGCCTGTTGGAAGGCAAGTGACTCAGGTAAATGCTCATAACTGTTTGTGATGTGTGTTTGTTGGACATGTTATAATTGTTGACAACTTAACAGTAGCTAATATCCTGTGTATTGTCTGAAATAGAGACTCCTAATGGTACATGCAGCTTCATGTTGGTACTGTGCCTAGACCAGTAAGATTGTGTGGTGCCAGTGGACCTGTGCTTATAATTGTATAGATGTTCTGGAATTCCAGCTCTAGAAAAGATGCACATTAGTCTAAATTGCCACTTAGTAACATGTACACAGGATTAATACTTATATGGAAGCATGATTCAGAAAGTAGATGACGTTCACCAATACTTATGCACTGTTATGTATAAGACCATGTTTTAACCACAGGGAGGAAGACAAAAATGATGGGGGTCATGACTGTACTCCACCTAGTAAGTGTTATGGAAGAAGATAATCTAGTTAACTCCATGGTGGTGTGGAAGGTCAGTCACCCCATCTAGAGGAGTTGCAACCACATCCTAAAGACCGTCTATAAACTGCAAATAGAAAACCAGTTTGGACACCACTTTTTGACACACTTTCCCAGCATCAGAAAAGATTCAGGGCCTGTTCTGTCTCCACTACCACAAAGTGATTATCTCCTGTGTCTAAGAAACAGTGGGGATGAGGTTTGGGTTCCCCACCTATAGTTCTAATCATAAACAATTTGTTGGGATGTGTATTAATCTAGTGGGCCTTATCTCAGTTCTTAGACAGATCTTCCTATCATCTTAAACCAAGGTGCTTGTTTATATGTTTCTCTTGTCAGCTGATGTGTGAAAGTTAGAGTAGTACATTGAGTAATACATCTTTACCACATCTCTGTAATGATCAATAGATCTCAATACCAAGGACTTCAAGGAAGAAAAGGAGTTTTTAAAAAAAATGTTACACTGTGATTTTTATAACTTTCTGCTTCTCTCTTGTTCTGGCTGCTGGAAAGCTCAACAAAACAGTCCATTGAGCCAACTACTTACCCCAATTTATTTTACTCTGTCATATTGCTTTGGAGATTGTTTCAATCCTGTTTTTGAACAATGGTATATATAAACAGATTCTTTATTTTTGGGCATTCTGTCAAGGACATTTAGAAGTTGTTCCTATTTCCTGCATAGGCTTTCATTGATTTCCACAATACCTCACTAATTTTTACTGAAGATTTTGTTTCATGTTCAACCTAATTCATTCATCTGGAAAGAAACATGTTTTTGAAAAAAGAAAAAGAAAACTCACATATTAAACAGGTCAGGGCATCCTGCCACTGAGGAATGTGTATTAGACCAGAACCCAAAAGAACTACTTCCTGGATATTAACCTGATAAATTATAACTTCTTTGTGAATAGTTAACTTAATTGCCAAAATTGCAGGGATGATCATGTTCATGGAGCCATGAAGAAATAGTAAGGCCAGACTCATACCCTAGCTGTCCACTGAATGCCATCTCTGGCACATTGAGTCCATCTCATACCTTAGAAAGATGACAGCAGCGTCAGCCCAATTTCCTCAGAAAGAAGAAAGGACAAGCCACTTGTGTTCAGTTGCAGGAAAGCCCTTCCTTCTCTCCATCACTCTGAGAGTCAAAGCTGGGTAGGTAGAGTGTTTTGTGCGTTCTGGTGCTCAGTGATGGACAAGATTCATGGATTAGGAAACTAGGAAAACCCCAGTGGAAAGAGCAGTTGAGTGGTTTGTGTGATCCAAAGCCTCCACCTCCACCTGAATGCACTCCAAGTGTAAATGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024245:ENSRNOT00000020281:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGAGGCGGTGTTAGAA
R:
CAAAAGGCCTCTGATGCACCA
Band lengths:
355-2342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]