HsaINT0185865 @ hg19
Intron Retention
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677]
Coordinates
chr16:25247322-25255597:-
Coord C1 exon
chr16:25255106-25255597
Coord A exon
chr16:25252060-25255105
Coord C2 exon
chr16:25247322-25252059
Length
3046 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ATTGTCTTTCATTTTTTCAGATT
3' ss Score
10.99
Exon sequences
Seq C1 exon
GCGTGCACTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTCCGTGAGACTCGGTTTTATGAAGCGCTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGGGCTGTAGCTGAACAGCTTCGAGAGTGCGGCTTCCTCCGGACACCAGAACAGTGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGCAAGGTGAAAAATGGCCACGTGCTAGAGTCCTGCGCGTTCTACAAGGAGATGGATGCCCTGATTAACTCTCGGGCATCTGCTCCTTCCCCCAGCACCCCAGAGGAAGTCCCATCACCTTCAAGGCAAGAAAGAGGGGGTATTGAGGTTGAACCCCAGGAACCTACAGGCTGGGAACCTGAAGAGACCTCACAGGAGGCAGTAATAGAAGACTCTTGCAGTGAGAGAATGAGCGAGGAGGAAATTGTGCAAGAGCCAGAGTTCCAGGGACCTCCAGGTCTACTGCAGAGCCCAAATG
Seq A exon
GTAAGGTGCAAAACCAAGGAGTTTTAGTCCAAAAGAGGAATAAGTGTGATTTACTGAAAAATGAGTAGATCTTGCACATAGCTCATGAATATTCCTTCATTCAAGAAATATTTGAGTGCCTGTGCTACTTGAAGAACAGGGGATATAGCAGTGATGTTCTTGGCATGGTGGCTCACACCTGTAACCCTAGCAGTTTGGGAGGTTGAGGCGGGTGGATCACCTGGGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTGAAAATACAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAAACCTGGGAGGCGCAGGTTGCAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGTGATAGAGTGAGACTCCATCTGAAAAAAACAAAGTTCCTGTTCTCATGGTGCTTCTATTCAAAGGAGGAACTCACGTTAGAGTGACTCAGTCCTTGGGTTCTCAGCCTTGGTTTTTGTTGGTATGGGTCAGACAGTGTTTTGTATCTCCTGGAAGTACCGTGGGGAAGAAAAACTTGGAATTACACATGAGAAAAAACTTGGATGAAGAAAGTGTTTCAGTAAGCACAAAAGAAGAATATCTTATGGTTATATGGGGTGTGCAAGACAAAAAAGATAGGCAGAGACTAAATAAAAGACTTTATTCTGGTCCTGAGCTCCACCTGCATGTTTCCCACTGACTTACGCCCTCGTGGGCCTGTCACTAGTAACTCAGGCTTAAGATGTTCAAAACTAACTTCACCATCTTCCTTACCACACCACGGCTCTTCCCTGTGGGCTCCCGCCCTCATCCAGACTATCACGTCTATCTGTCCCCTCTTCAGTTACCATTAGCCACTGTCTAGTTCAGTCTTCTCTCTCTCTTGCCTAGACTGTTGTAAAAGCCTCCAAACCAGTTTTCTCCACCCACACTTTTATTAAGGTTTCACAGCCATTTTTGATCTGAGCTCATCTTACTCTTCTAGTCTACATGTCAGCATTTTCCTTCCTCAACTCTGCTTATTCAGAGCGGAACTACTGGCTATTTCCTACATGCACCTCAAGCTCTTTCACATCCAAACTTTAGCTTGCGATGTTCCCTCCACCTTGAATGTCCTTGGCTCTACATATCTCCATGTCCAAATTCTCTCTCACCTCCCATACTTTGTCTGTCTCTGTCTTATGGCACTGAACACTTTGTATGTAAGATCTCCCAGACATGGTGAGCTCCTGAAGGACAGGAGCTCCGTCTTCCCATAACACTAGATTAAGCCCTCGGCAATCAGTTGAATATGCAGGGTAATTCAGGACTAGTTTATTGAAGCAAGTGACTCTAGCTTAGTATATATATGGGAAATTATAGTATGAAGGCTTGAATTAAGTCCTGTAGAACCCTGGCTTTGATAACTGGAAACAAAGTCCTTGTGAATCTTGTTTTTAAAGTGAGCTCCAAACCTATCATCAAATTATCAAGCTTTCTCTGAGCCAACTCCTAGGTTGTGACTTCCTCCAAATCGCAGAACAATGTTGAACTCAATCAGAAAACTTCAAAAGAAGTACTGACAGGCCAGGTGTGGTGGCCCACACCTGTAATCCTAACACTTTGGGAGGCCAAGGTGGGAGGATCGCTTGAGCACAGGAGTTTGAGACTAGCCTGGGCAACATACACCCCATCTCTACAAAAAATAAAAAATTAGCTGGGAGTGGTGGTGTGCACCTGTAATCCCAGCAACTTCTGGGGTTGAGGTGGGAGGATCACTTGATCCTGGGAGGTCAAGGCTGCAGTGAGCTATGATCATGCCACTGCACTCCAGCCTGGGTGACCAAAAAAGTACTAATAAGTGAAAGATGGAATTGTTAGGGCTTTTTACTTAAGTGTCTAGATTGATTGATGGCTGCCCTCCTCTCCCCATCCCATGCCACAGCCTCCACACTTGGGATTGAGAGTTATCTGTGGTTTCTACTGAATGTGTGGAAGGAAAGTAATGTTGAAACTGGCAGTAGAAACAAGGCAGGAGAGCAGATGCTTAAGAACAAGGATTAACCTGAATTGGGCCTAAGTTGCACAGCTTGTGAAATGTTTATGGATGAAATAACGTGATGTCTGGAATTGGCTTCAAAGTAGTCTGGATGGAGGGAGCAGGGAGTATGTGGGCGTGGAAATGAAATGAGATTGGCCATGAATAGGTCATAGTTAAATGTAGGTAAGTGGTTTGTGGGAGTTCATTATACATACTGTTCTCCAGACTTTTCTGTGTTTGAATTTTCCATAAGTTAATACAAAAATCACACAGTTAATAACTCACCAAGATGGGACCAGACTCAGAGCCGTGTAATTCCAAAACTTGTCTCTGTTCACCATGTCATGCTCTCTGTCCAGAAAACTTAACAGAAAATCTGGATCCAAGATGTAGTGAACGTGGGATGTAGGTGAAAAGAGTGAGAAAATAATCCAATTTGGGTAACAGTGAGAATTAAGATTTCATTTAGTGTGGTTTATGGGACAGCCTGAAAAACAAAGTGAGAAGAACATTTGAAAAGAAACAGGTACCCTTGGGTGGGATATGATTAGATATGTAGAGGAATTTAGTTCCTGAAGTCCCTCGAGGAACTTGGACTTAGTCAGAATCTAATCTAGAGATCAGTGTGGTGTAGTGTGCTTTAGTATAGAGGTGAAATTATGAAAATAGGATGAATTAGAGTGGAACCTCAGGGAGATAAGCCAGGTTGCACCCTTGTTAATCGGGATATGGATGGGGAATGATGGCTTGGATTATAATGCAGGAAACATTTCTTAAGGCCTACTCTGTACTGGCTGTTATTGGCCTGTTTATGAATGGAAAGAAATATAGCAGAATGAATCAGGGAAGAGTCACAGGATCTGAGGTTAGAGAAGTGTATGGAGAGCAAGCGGATCAAGCCTTGCAAGCCAGGTTGTTTATGGTTAATATCAGACTTGTATAAAATTTGTATTGTCTTTCATTTTTTCAG
Seq C2 exon
ATTTTGAAATCGGAAGTAGCATCAAGGAGGATCCAACACAGATAGTATATAAGGACATGGAACAGCATAGGGCATTAATAGAAAAGTCTAAAAGAGTTGTTTCCCAGAGTACCGACCCCAGCAAATATCGCAAAAGGGAATGCATCTCAGGAAGACAATGGGAAAATCTTCAAGGAATTAGACAGGGAAAGCCGATGTCTCAGCCTAGAGATTTAGGGAAAGCCGTTGTGCATCAGAGGCCTTTTGTGGGGAAGAGACCCTACAGACTTCTCAAATATGGAGAAAGCTTTGGAAGGAGCACTCGTCTGATGTGCCGGATGACCCACCACAAGGAGAATCCTTACAAGTGTGGTGTCTGTGGGAAGTGCTTTGGTAGAAGCAGGAGCCTGATCAGACACCAAAGAATCCACACAGGCGAAAAACCTTTTAAATGTCTTGACTGTGGAAAAAGCTTTAATGACTCCTCAAATTTTGGTGCCCACCAGAGAATCCACACAGGAGAGAAACCCTACAGATGCGGAGAGTGTGGAAAATGCTTTAGTCAGAGCTCTAGTCTTATTATACATCAGAGAACGCACACCGGTGAGAAGCCCTATCAGTGTGGAGAGTGTGGGAAAAGTTTCACCAACAGTTCTCATTTCAGCGCCCACCGGAGAGTTCACACTGGGGAGAATCCCTACAAATGTGTGGACTGTGAAAAAAGTTTCAATAACTGTACGAGATTTCGAGAACATCGGAGAATACACACTGGAGAGAAGCCCTATGGATGTGCCCAGTGTGGCAAACGTTTCAGTAAGAGTTCTGTTCTTACCAAACATCGGGAAGTTCATGTGAGAGAAAAGCCTCTGCCACACCCTCCATCTCTGTATTGCCCTGAGAACCCACATAAGGGAAAGACTGATGAATTTAGGAAAACTTTTTGATGATGATCTTCTCTTCCTAAATGCCCCCTTAGCCATTTTACCCTAATCTCATTCTTGGAAGCAATCTTTTCTTAGCTATGAAGTGTAATTTCCAAGATAAACTTGAGAATATAAATAAACTAAACACTTTCATCCTGTTCTCACCTCTGCCTCTAACTTCATCAGTCTGTTCCTCCTCTTCTGTGTGTCTCAGCTTCTCCTTTAAGAATGTGGCGAAGATACATTGTCCGAGTTCAGAATGAAATACCCTTCAGTACATTGAGGCCACTGCAACTGGATTGCTAAGTTCGGCAACATTCAAGATCTTCCATATGGGTGAGAGTTGTCTTCAAGGATATAAAAAATGCCAAAAGTTTTTTTGTTGTTATTACCTACTCCGTGAGATCCTGGATGAAACTTGATAACAGATTTTCACATTTAGATAGAACTTTGAGGAGTCTGATCGGAACTACATCAAATCCATCTTGGTTTTGAAGAGATCCACAAAAGAAGAGTGAAGATTTTATAGCTTTCCTCAGAAGTCTGTTACAGTGTACCTTTTTTTTTTTTTTTGTCAAGAAGTTGATCCAAATAGCTAGGGCAGAATCCCTGTATTGTCACTGAAATCCTGTTACTAATGCCTTGCCCTCCATGGAGGTGAGAAGCAATTGATCACCCCTCATCCTTTTCTGTACCCGAAGACTTAAATCCCCTGGCTGCTGCTTCTCCAGCCTATAAGTAATCCCAGGTCCTCCTACTGTTTCTCATAGCCCTGCACTTGCCTCTCAGTTGCTCTGGGTGCTCCTGCCGGCCTCTTCCGAACTACCATGCCCTCCTCAGATAGAATAGGAGGCCTGCTCGTGGTGTGTCTCACTAAAGCAAAGTAGGATTTCAGATGCGTTCTAGTTCTATCCTCTAACTTCTCTGGCTCTTATCTAGAACATGACTGGCATGTTGGCATATTTCGTACCTCCCACCCCTGCACTGCAGTATAATATTATAATAGTGTTTCTAAAACTTTAAGGGGATAGGGAAGAGGTAATAGACACCTGAAGCATTTCTAAGACCAGTTGGACTCCTTTGGCCTGCTGTCGATCAGATAGCCACCTCAGCTTAGACCAGCGCTCTCAGGTCTGGCTGTTAAATCTCCCAGTCTCTTTTCCTGAGGCTTCTAGTCCCTGTTCACCGCATCAGAAACCTAACTGTAGTGTGCCAAGTAACTTAACACAACTCTAGAGCTCACTGGGTGAAAAGTGGGAACATTTATAAAAACTTCAATCCAGAAATCCAGAACACCGTTTTTGTTTTCCTCATTTACTTGTTTTGTCTGAAAAATCTCTTTGAGAACCCCCGGCAGTAACCCAGTAAACACTGAAGGAAAAGTTCTGATGGGGGATGGTTAATTGACTTTTGAAGTTACAGATGAAACCCAGAGATTTGATTTTCCATGGCCAGTTGCTTCAGGATGGAGTCAGTGGCGTTTATTCCCTTAGTATGTAGGTGACCCAGGGTGGCTTTGCTTTGGCAAGGGAGAAGTCACAAGTTTAATGGGAAGGGAACCGGAGTTAGGGCTGTTTGTGGGTGATTATTTTGCTCTTCTCTCTCCCTTTCTTTGTCAAATGCTCTTATTTGAAGCCATCTGGAAATGATATTTTTCCTTTTGGTATGTTTCAATCTTTTGAAACTTGTTCAGCAAAGTACCTAGGAGGGTAGGCACTGTAGAAAGAAATCTAATTTATGGTGCCAGAATAGGGTGTGGCCTGTTGGAAGGCAGGTGACTCAGGTAGACATTGATAAATGTTTCTGATTTACATTTGTTGGAAATATTATGACTGTTCACATCTCAATAGGTTGATTTTTCTGTGTTGTCCAAGTTATAGATTTCTAATGCTAAGTACAGTTCCATGTTGGTAGTGTGCGTAGCACAGTAAGATGTTTGTGGTGCCAGTGGGCTTGTGTTTATATTGTGTAGATGTTCTGGAATTCCAGCTCTAGAGAAGATGTAAATTAATAGAAATCACCACTTAATAATATGTACACAGGATTGATATTATGTGGAAGCATGATTCAGGAAAGTAGATGACTTATTCATAAATATGAAGCACTGTTACATGTAAGGCCATGTTCTAGCCACAGTGAATGATAGAAAAAGGAAGGAAGGGGCATGGTGCCTGGGCTCAAGGAACTCACAGTTTGATAGAGGAAGCATCACAGCAAAAGTTGGGGCCACTTACACCATGGCAGTTACAGAAGGCCAGGAGCTCAGTCATGAGAACATCACCTTCCCCTGCAGAAGAGTTGCGCTAAGTTGCCCAGAATCATATTCTGTACCTTCATCTCTCAACCTTCCCCAGTGGCAGGAAAGGGTCAAGCAAGACCCATTCCCTCTCTAGTGGGACAAACTGATTCTGTTTAACTCTCATATGCCTGGGAGCAAGCTGAGGTGGAATTTGGGTTCCCCTATCTCTACTCCTAATTGTAAATGGGCTGTCTAGACATGTGTTACATTAATTTGATGAACTTTGTTCTGAAGAAATGGAAGGTCTCCCCCCCATTTTAGACCAACACTACCTGTCTCCCTGCATTTTATTTGTTTTCACCTGGTACATGTAAGTCAAAATGAATAATCATGTTCTGACCAATGTGTCTTTTAGATCACATAACATTGCCTTTATGAAGATTCATAGAAAAAGGTTTTTTTATCTAGATCTCAGTGCCAAGGAAAGCTCTGATCCTAAGCGCAGTATGTGTACACACACACGTCTACATGTGTGTGTAGATCTGTATGTATGTATTACAAACACTGTGATTTTTGTAACTTAAGCTGCTTTTTCTCTCTTTGTTCTGGCTGCTGGAAAGTTCAACAAAACTTACAGCCCACCTCAACCAACTACCCCAACCTATATTTATTTAATTTCATCTTATTTCCTTGTAAATTGTGTCAAATCCTGTTTTTGAAAAGCAGCATAGACTGACAACTTTTCACTATCATCTTATCGAAGGCATTTTGGAAACTGGGGTCGTATGTCCCACCTAGGCTTGCTTTGTTACTGCCACAAATACCTCCAGTTCTTACCAGTGATGTTATTATGCATTCAACCTAATTCATTCATCTGGAAAGAAACAGTTTTTTAAAAAGGGAAACCTCACACGTAAATGGCTCAGGGCAGCCTGGCCTTGGTGGAATGAGCATGAGACTGGAAGCTGAAAGAAGCAAGTTTTAATCTTGTCACTAAATGAGTGTTGTTTGACACATCATAGCCTCTCTGGGCCTCGGCTCCTCATCTGAAGAGAAGTTGAACTTAACTGCTAAGTTGCTCTGGCTCTAATGTTTCATGAGGCTGTGGAGCGTGATATAGATGCGGAAGAGGTTAGAAGACCAGGCTGCCGGCCCAGCTGTCCTGTGCCTGCCACATCTGGCCATACCAAATCCATCGCATGCTTCAGGAAAGGGAGGGGATGCTGTGACAGCAAACTCAGCCCAGGAGCTTGTTGGGGAAGGAGAAAGGGCAAGTCCCTCGTGGTCCACAGCAGGCACCCCCCAAGCACCTCGATAACCAGTGGCAGGTAGGCTGAAGTGAAGGAAGCCTCTGTCAGGAGGTCTGGCGCCCAGTGACAGACAAGACAGCTGTGAGGGAGCTGGGGCAGCCCTGGCTAAAGGAATGTCTGAGTAACTTGTGAAACTGGAAGCCTCTGCCTCTGAATGCATTCCAAGACCTGGTGCAAATGGATGTCCATTCATTGTTTTGTATCAGTGTTCACTTAGATGTCTTCTTGAAAACTTGTTTGTGGAATAAATGTCTAAAATAAATGGCTCCCACTGGTTTCTGCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592-ZKSCAN2:NM_001012981:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)