BtaINT0164711 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111192213-111193558:-
Coord C1 exon
chr3:111193395-111193558
Coord A exon
chr3:111192286-111193394
Coord C2 exon
chr3:111192213-111192285
Length
1109 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
AACTTTTTTTTTTTTTTTAGGAG
3' ss Score
10.45
Exon sequences
Seq C1 exon
GAAACTGTTTCCCAAGGAAAAAACCCATTAGTTTGGAATTAGAGGATTTCTTTGCATCAGATACTAAGATGAAAGAATCACCAACAAATGGTGACTGTGACAAGGCAGCGGTGACACAAGTTAAGAGGCCAGAGGAAATTAAGGTGGAACCCGACAATACTCAG
Seq A exon
GTAGATATTTCACCGTATTTTCTGTTTCCAGAGTAGCACTTAATTATAAATTTTAGTATGCAGATGCTAGTTTATTGGTTGAAAATCTTAATTCCTTCCCCAGAGCAGTTGACCAAGTAATGTAGAATGTGTGGTTAAGTGCCATAATAAGCATGTGCAAGAATGTGAGAGAAAGATGGACTGTTTGGATGTGGGTATTGGGTTTAATAAAAAAAAAGATTGCTTAGGGTATTATGGGTCTGTCTGAGGTTAGCACATACTTGTTTTCATTTTTCTTAACTTGAAACAATACAAATAACTAGTTATATGCTTTTGTGCTACTATCTCTATTAAGTAATAGAATTATTTAGTACATTTTAAGTACTTAGAGTTTTTCTCTGTTTATCCAAATTAGATTCATTTTTATCCTTAAACTTTTTTAGACTTATCAAATGCTAAAGAACATATAAAGGATAAATTAGATCAAGCTGTAAGCAGGGCTAAATTTCCTTAGATTGTCTGTATATGAACCTGTTGAAATTTACAATGAAAAGCAATTTCATTTTAAATTTACTTCTAGTATTCTGTTTAGAAATAACATAAATTAGTACCAAGTAAAGGGTATGACTCCCATTGGATGACAATGGGCAATATTAATATTGTCCATCTAGGAAATACCTGTTACTTCTTCAGTTCTTGAACATTCAAAGACATAGAGCAAGTTTGGGTTGATTGCCTGATGCTCTGAAAAAAAATCCTGCTTTGTAAGACTCATTCAGCCCAGTCTAAGAATTTTTGTTTTTAAGGTCCTTATGAAGACAATTAGCTGTTAGTGATCAGAACAAGAAGGGGAAATAAGTACCATTATTGAGTATGTCTACCCTCTTTTTGTAGTAGCTGCTAAGGGACTATGTTAACAAAAACTTATAAAGTCGTATCTAGGTACAGTAGAAAATAGTGTAATAATTAGTGGGTGTTACCAGCCAGAAGTCACCAGAAGGGGAGTATTTACTTATATACCATGGTTCAATGCAATAATACAATTCACTGAACAGACTTGAGCATAATATATCATTTTCTATTGATTGATTGATGCTTTTCATTATTTTCAACTTTTTTTTTTTTTTTAG
Seq C2 exon
GAGTACTGTCAAGCCCAACAGCCCAAAACTCAGGAGAATGACCTGAAAATAAACTCTGCATTTTCAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555:ENSBTAT00000061426:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATTAGTTTGGAATTAGAGGA
R:
CACTGTCTGAAAATGCAGAGTT
Band lengths:
215-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]