HsaINT0185964 @ hg38
Intron Retention
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35093914-35095891:+
Coord C1 exon
chr1:35093914-35094083
Coord A exon
chr1:35094084-35095818
Coord C2 exon
chr1:35095819-35095891
Length
1735 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
TATTTTTTTTTTCTTTTTAGGAG
3' ss Score
11.37
Exon sequences
Seq C1 exon
GAATCTGGAAACTGTTCTTCAGGAAGAAACCCATTAGTTTGGAACTGGAGAATTCCTTTGCATCAGATACTAAAATGAAAGAACCACTTTTAGGTGGTGAGTGTGACAAGGCAGTGGCATCACAGCTGGGGCTGCTAGATGAAATTAAGACAGAACCCGACAATGCTCAA
Seq A exon
GTAAATATTTTCCCTTATTTCCATTATTTCTAGAGCAGCATTTAACTATAAATTTTAGTTACAAAGGTGCTGAAATGATTCATTGAAAAACTCAAATCCTTATCTCCTCCAAAGCAGTTAATTAAATAATACAAGGTATATGGTGTTAAGTGCCACTACAAGTATATGTAAGAAAATTATTTGAGGAAAGATTAGACTGTTTGGAATTGGGTTTTTGCATAGGTAAAAGGATTGTTTAGGGTGTTGTGGGCCTAGCTAAGGTTAACACTTTTTTTCTTTTGCCAGATTCTACTTCCAGAGAAGGTTAACACATTTTGTTTTTGTTTTTCTTAACTTAATACAAATTACATTTTTTAATCTAAATTAATTTATGTAAATTAAAAAAAATTTTTTTAGACATATCACTAAAGAACCTATAAAGGATGAACTGACTTGAACTGTGAGTATTGTTTAAGTAGGGAAAACATTCCTTAGAATGTTTGTATATATGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGAACTTTGGGAGGCCAAGGTGGGAGGATCACCTGAGCCCAAGAGTTTGAGACCAACTGGATGACAAGACCTTGTCTCTATAAAAAATACAAAAATTAGCCAGGCATAGTGGTGCACGCCTGTAGTCTCAGCTACTTCAGAGGCTACAACAGGAGGATCGCTTGAGCCCAGGAATTCAAGGAAGCAATGAGCTATGATTGTGCCATTGCACTCCAGCCTGGGTAACGAAGCGAGACCCTGTCTCTTAAAACAAAAAAAAGGAATGTTTGTATATGAACTGTGAACCAGCTGAAAGTTCTAATGAAAGAAAAAAATCACTAAAAAGGGTAATTTATTTGTAGTATTCTATTTAGAAATAGCCTAAAGTAGATTAATATTAAATAAGGGTATGCTTACCATTGAGTTGTTAACACTGGGGAATGTTACTCATCTAGGAACTATCTATTGCTTCTTCATGCCATGGACATTCAGGCATAGATCAAGTTTAGATATGGTGGCTATGAAATTGCCTCCTGCTCTGAAAAAATTGTCCTTTGTAAGAATCATTCTGCCCAATTAACAATTTCTTGGGTTAAGGTCTTTATGAAGACAATTAGCTGTTAATGATTAGAGCAAGCAGGGAAGGCTGGGTGTGGTGGCTCATTCCTGTAATCCCAGCATTTTGGGAGGGTGAGACAGGCAGATCACTTGAGGCCAGGAGTTCAAGACCATGGGCAACATCTCCACTAAAAATTAAAAAATTAGCCGGGCATGGAGGCATGTGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGAAGTAGGTTATAGTGAGACGAGATCGCGTCACTGTACTCCAGCCTGGGTGACAGAGTGAGATCTTGTCTCAAAAAAAAAAGAAAAAAAAAAAAAAACAAGTAGGGAAAATAGTTGTAATTCAATATGTCTGCTCCCTATTGATAGTGAATGGAGGGATTTTGTTGACAAAGATTTTGATGTCACACCTGGATACCATAGAAAATAATGTATTGGGTGATTAGTGTTGTCAGCCAAAGAGCACCAAAAGGGTAGTGCATACCTGTGTATTTTGGTTCAATTCAGTTATACAATTCATTGACCAGACTTGACCACAATTTATCATTTTCTGTTGAATGACTGGTTGTCTTAAATTCATTGTATTCACTATTTTTAATTATTATTTTTTTTTTCTTTTTAG
Seq C2 exon
GAGTATTGTCATAGGCAACAGTCCAGAACTCAGGAGAATGAACTGAAAATAAATGCTGTGTTTTCAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056:ENST00000373330:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAGAAACCCATTAGTTTGGA
R:
CACTCTCTGAAAACACAGCATT
Band lengths:
225-1960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains