BtaINT0164720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36414375-36416691:-
Coord C1 exon
chr12:36416575-36416691
Coord A exon
chr12:36414526-36416574
Coord C2 exon
chr12:36414375-36414525
Length
2049 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GGTTCCCATTGTGCATTTAGAAC
3' ss Score
5.2
Exon sequences
Seq C1 exon
GCTCTCAGCATGCAGTCGTCTCCCAACGGCCAGTTTGTAGCGCCAAGTGATATTCAATTGAAGTGCAACTATTGCAAAAACTCTTTCTGTTCAAAGCCAGAAATCTTGGAATGGGAG
Seq A exon
GCAAGTCATGTTTTATTATGCATGCTATCTTCTGCTACAGTAAAAGTCTAGTATAGTAATCATGGCATTTTCATTTGAGCAACTATTTCCTAGTGAATAAAGATTCATTTTTCAGATTTAGTGAAGATTGGATTATTTGCTTTTTTTTTTTTTTTTAATGTGGGAATAGCACCAGGAAAGGACCTGTTTCTTTTTAAGTCAAAGAGCACACTGAAGTCATACTCCACATTGTGTTCATGGTAGTGTAAGGAGTCTTTGCTTGGTCACATATCTACAGCGTCTTCTGTGTGGAGTGTTCCTGTTCCCACCTCTCTCCCCACCTTGTGTTTATAAGCATTGTCTGTGAACTGTAGGATCTTATACTGCCTTAGGTTTATGTTGTGATGTAACATTTTATAGTTGTGTTTTATCAAAGAATCCAAATATGAATTTTTTTTCCCTTTCTTAACCACCCTTGTCTTCACCGGTATATTAATTTACTTTGCCATATCTTTTCGCCAAAGCAGAAACTCTGAGCATTAATGTTTGTTTTGGAAAGGGGCAGTAAGGAGTGGATGGAGGGAGGCAGGGAGGGAGGGACAGGGTGGCCCGGGCTAAACGCAGCTTCTTGAGCTGTGTTCACCTGTGGTCATTCTTTCATGTTTTCGAGGGCATGGAGTGTGTGATAAGATGGTCACAAGATGTAGTGCTAAGAGCCGCTGACCTTGAGCCATACCTACTAGTGGCTCTTGGCTTGTCCCTGGTGTCTTAGTCTCAGGCAGAAGCTGGTCCCCAGAATGGGACCACGTGATTTCTGAAGTACTTTGGAAATCCGAGGTTGCATTATTTAGCCCCTAAAATTTTTTTTGTTTTGCTATTTTGTTTGGTGCTGTCTTAAGGGTATTTAAATTGGTCATTCTTTGAGACTGTTATTGGCACCAGTGATGGTTTTCAGTGACTGTTCCCCTCTTTAAATCACAGCAGGAAGGATATTAGGCCTGTAGGAAGGAGTGAAGGGGTGCTGAAGAAGGAGGGGAGGGTGCATAGCATAGCGCACACAGGAGCCAAGAGCCCTGCACACACTGGGCCTGGCGACCCGGGTGAGCAGGGTCCCCACAGCAGCCCCAGGCTAGTGCTGCCCACTCTGCGTTCCCAGCTGTGGGTCTTTATACGAGGCTGAGTGAGCCTGTCCCATAGGCCTCTTGCTTCTTGTCCCACGGTTGACAGGCTTCTGGGAGGGCTTATCCCCTGTAGGGCAGCTCGGCTCACTCCTGGGGTGTTTCCAAAACCTTGGCCTTTGTCCCCTTGGTCTTTAGATAGTGCTGTGAGTGTCAGGCAGATGGTTTGGACCTCTTCTCTGTGCTCTGTAGTAAGAGAGGGAAGGCTGCCGCCCTGGACATGTTACCTTACCCCTGCTCAGCTGGCTACTTGCGAAGTCACTCTGGCTCTGGTGGGTTTGGGGACAGGAGACACAACTCTGTGATTATTAACCTGCTCCACTCAAGGGAACCAGCTTAGACTGGGCACACACCGTGCAGTGGCCCCTACTAGGGCTGTTACTATTCCACTCAAGGGAACCAGCTTAGACTGGGCACACACAGTGCAGTGGCCCCTACTAGGGCTGTTACTGTTAATGCTGTGGCAGGAATGCGACTGAGCCCACTTGACTGTACTCCACAAAGAGTACTTTTTAAGTGAAAATCATATTATTGTCCTAGTTCTTATCTTTTTGTAGCTTACCCATGTTGTACCTTCCTTTGTTTTCCCATTTCTCCAGTTCTGTTAGCAACACTGGACTGCCACCTTTTCTTAGTGATACTTGCACTTTTATTCTTTGAGTAATTTTAGAGTAGTTAATGGTATTGAATTTTGTGGAGCTATATCTAAATACAGCAGTGAATTAGTTAAATTAGGTGTTTGTGGCCTATTATAGGAAATGTATCACTAAGGATTGTAACATTAAGTAGGTAATGATTTAACTTTGTTTCTGTAAAAGTGGCTTGTTTATTTCTTAAACTTGTTCTTGAGGTGGTTGTCATATACTTACCAAGGTTCCCATTGTGCATTTAG
Seq C2 exon
AACAAAGTTCATCAATTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGCTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development