HsaINT0185975 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20605459-20608544:+
Coord C1 exon
chr13:20605459-20605575
Coord A exon
chr13:20605576-20608393
Coord C2 exon
chr13:20608394-20608544
Length
2818 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GGTTCCCATTGTGCATTTAGAAC
3' ss Score
5.2
Exon sequences
Seq C1 exon
GCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTAGCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGGAATGGGAG
Seq A exon
GCAAGTTGTATTTTGTAATGTGTGTTATCTAATGCTAAAAAGAAAGTCTAGTAAAATAAGTGTTGTATTTCCATCTGGAAACCTATTTCTTGGTAGATAAAAATATGCTTTTCAGATTTTTTTTTATGATTGGATTATTTATTCTCATGTGGGAGTGGAAAACCAACAAAGGATCTATGTCTTTTTAGGTCCAAGAAAAATTACTGAAGTCATATTCCTGATATATTGTATAAGTTCATAATAGTGTACAGAATGTCACTTTGTTTAGCTACGTACCTAGAGCAATTGTCTTTCCTTTTTTTGTCCCATGTTTCTCCCTGTCCTGTATTATCTGAGAACGATATTTTCTATCACTCAGTACCTGTACATATTAGAATGTATCAGTCATATACCACATTGTCATTTATAAAATGATACAATTCTGTAATTGTTTTTTTTTTTTTTTTTCTTTTTTTCTCAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAATCTCTGTCTCCTCAGTTGAGGTGATTCTCCTGCCTCAGCGTCCCAAGTAGCTGGGAATACGGGTGGGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCAGACCTCAACTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCCATAATTGTGTTTTAATAAAACAATAGTGGCCTATGAATCCCACTACAAGTTTATTTTCTTTTCCCTTTTTTCATTAGTTTACTGATTTGCTTTGACATGTCTCCATTAGCAATAACGCTGATGATTGACTTTTATTTCATAAGGGGGCAGTAATAGATGGATACATGGCCAAGACTGCCCAGGCTGCCCATTGCTTTCTTGAGCAATGCTTGCCTTTGGCCATTGTTTCTTTTCACTGCTTTAGGGGTGGGGCAGGGTGGGAGGTAGTGCATGGAGTATATGATAAAATGGTATACAAGATTTAGAAGATGTAGTATTAACACTGTTCTTGAGCCAAAATTTATTAGGAGCTGTTGGTGAGTCATTCAGTAACTAAGTCTTAAGTGAAAGGTGGTACCCAGAACTGGATTACATGATTTTTTTTCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAATGGCGTGATCTTGGCTCACTTCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGTTTCCCAAGTAGCTGGGATTACAGATGCCTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGATCTCCTGGCCTCAGGCAATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGCGTGAGCCACCGCACCCAGCCTGGATTACATGATTTCTAAAGTACTTTGGAAACCTGAAATTTCATTTTAACAGTTTAATGACTGGAACATTTTTTAGTTTATTATTTGCTTTGGTGCTGTCTCCAGATCATTTAAACCAATCCCTATTTGAGACTGTTGTTGGCATCCAGTGATGATTTTTAGTGACTGATAACCTTTAAGTAACAGCAGTAAGAATGAAGGCCCAGTAAGAGGTAATAAAGGAGTGATGAGGGAATGAAGAAAGAAATCCATTAGCAAGCATACAGAATAATAGTGTCATATAGAAAATGAAGATCCTGCATACACTGAATTTTGATACTAGATCAAAATGAGGTCCTTTTCACTGCATTTATGTCAATGCTACTCCACTTCTGTAGTTGTTTTGGTGTATTGCTTTTATTTACATGGAGGTTAAGTGTTAGAAGCAGTTAAGAGACACTGCCACACTGAATGAGAGTTGAGCGTGTCCCCCTGGGAGATTGAGAATTCAGTGGTCTCTTTCTCCTCACTCCATGTGGCTTCTTTGTTGCCTTCCTCCTTCTATAAATTACATAGTCATAATGGGGCAACTTTCCACTAATGATTGCCTTACTACTTGAGTTGATTCCCAGACTCCCTCACCTTCCTTATTCTGGTCTTCACATGTCTTTGCTAACTGTAAAGTAAATGGTTTAGACTTAGTCTGTAGCCTGCTCAATAATGAGAGAAAAGCTGCCTCCCTGGAAGTTTTAACTTGTTCATACCTGCTTGGGTTAATATTTGAAAAGTAGCTCTGGCTATTGTGGGTTTGGGCCCAGGAGAAACAAATTATTACTAATCATGTTCCATTCAAGGGAAACAACTCAGTCTCAGGTTCAGCAGCACGCTGTGTGATGGCACCAAATTGAATACTTCATCCATGATACATCTGTTACTATTAAGGTGTGTGGTAGGAATGTGATGGAGCCTACTTGTTTATACTCAACAAAGAATTTTTCTTTTTGACTGAAAATATTATTAGTGCCATAATTTTTATCTTTCTTTAGTTTACCTATGCTGTATTTTCCATCATTTTCTTCCCATTTCTCCAATTATGTTAGCAACACCAGTCTATCATCTTATTTAGTGATACTTTTACTTCCATTAAGTAATTTTAGGGTAGCTAATGGCACTGAATTTTGTGGAGCTATGTTTAAATTTGGCAGTGAATTGGTTAAACTAGGCATCCATGGCCTGTAGGAAATCTATCCCCAAGGGTCTTAACATTAAATAGGTAAATGATTTAACTTTGCTTCTGTAAAAGTGGCGTGTTTATTTCTTAAGCTTGTCGTCATATACTTACCAAGGTTCCCATTGTGCATTTAG
Seq C2 exon
AACAAAGTGCATCAGTTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)