GgaINT0106896 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178310939-178311783:-
Coord C1 exon
chr1:178311667-178311783
Coord A exon
chr1:178311090-178311666
Coord C2 exon
chr1:178310939-178311089
Length
577 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTTTGTAATTCTGTGTTTAGAAT
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
Seq A exon
GTAAGGTTTTTTTCCCTATTATTTTTAGAATGGTGAAATGTTTACAAAAGTTTAAACCTGTAACTGCAATACAGTTTTTCTAGATAGCTATTTTTTAAAGCATGGAAACTTTTAGGTTAATAAAATATGTGGTTCTGTAGAATGTAATTCAGCTTTCGTCTGGATTACATGTTACATGAACAAATAATATGGATAACAAATAAAAACACATCTGTGGAATTTAAAGAAAAGTATAATTTTTCACCTTAGCCGAAAATTTGTAATCTACTTTTATCTTTGGTTATTGTAGTGAATAGCTGTGTGAATAGACTATTGTTATGCTGCTCTGTAAACGGAAGTATCAGAAGAGAATATGCCAAGAGTGACTGCCATATTTTTCTGTTTATCATTTTCATATAAATTGATGACTCTTTGTAGCAATTGAATAAGCATTGCTCATTTTTAGCATTAGAAGCCATATCTTAATTGTATGCTTTCATGTTTATTTACACAGCACATAAAAATTTGCAATTGCACTTACCAGATCTTAAAATTTCATGTTAACCCTCTTTGCGATGCTTTGTAATTCTGTGTTTAG
Seq C2 exon
AATAAAGTGTATCAGTTCTGCAGCAGAGCATGTTCTGATGATTATAAGAAACTGCACTGCATAGTTACGTACTGTGAATACTGTCAAGAGGAGAAAACACTGCATGAGACTGTGAATTTCTCTGGCATCAAAAGACCATTTTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGTGATCAGTCTTCAACA
R:
CACTACAAAATGGTCTTTTGATGCCA
Band lengths:
265-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]